Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01245 ATGAATTCCTTTCTTCCTAAACCGAAACTCTCCAATCCCCTGAATTCCCCTGTTCCAAAAACCAAGCTTTCAACTTCAATGGATTCAACTCTTTCACAAGACCCCATCTTCTCAATTCTTTCAAAAACTAATCTTTCTTCTGTTCCTATCGATTCCCATTTCTCAAAAACCAAACTTTCTAATCCCACCAACAAGCTTTCTTCCACTCCAAGCGATTCCCCTGTTTCAATAACCAAGCTTTGTTCAGCTACTCCAATGGATTCCCCTACTTCAAAAACACCACTTTCTGCTCCTCCACCATTGTCTGCAGCTTCAAGTTCAATCAGCAGCAGCAGTATCTGCAGCGATAGAAGCAGTGAGACCGACGAAAGCCCCTTCTCCTCTCACCGTTTCGAGCTTCAAGATGTAAAGTTTCAGCTACCAATTCAATCCACACCAACTCCAAGTTCCAATTCTCATAGTCATAGATCACTAGCTGTTCTTTCAGGCCATGTTGGTTCTGTTTCATGTTTAGCACTTTGTGGCGAATTCATACTAAGTGCATCACAGGGTAAAGACATCATAGTATGGCAACAACCGGATTTGCGCCTTTTCGCCAAATTCGGCCAAGGCGATGGATCGATTAAGGCCCTTGTATCCATTGGAAACAAGGTTTTCACTGCTCATCAAGATAGTAGGATCAGAGTTTGGAAGGTTTCAAGGAGTTCAGAGAATGTGTTTAGGCTCGTTGACACGCTTCCGACAACAAAGGACTATTTGGGGAAGTTCATGAAGCAAAGCAACTATGTCCAAACAAGGAGGCACCATAAGAGGCTGTGGATTGAGCATGCTGATAGCATTTCATGTTTAACTGTTCATAATGGTTTGATCTATTCAGGGTCATGGGATAAAACCCTTAAGGTTTGGAACCTTTCGGATTTGAAGTGTTTGGAGTCAATTAAGGCTCATGATGATGCAATCAATGGGTTGGTAGCATGTAGAAGAGGGATTGTGTATTCTGCTTCTGCAGATGGAAAGATCAAAGCTTGGGGAATGGAAAGAGAAAGGGAAGGAGGGAAGTTTAAGAAGAGTAACAAGAACTCACATTGTTTGAAAGGGGTTTTGGAGGGTCATAAAGATGTTTCATTGAATTCTGTGGTTGTTTCTGATGATGGGAAATGGGTCTATGGAGGTGGTTCTGATGGTTATGTTATGGGGTGGGAATGTTCTGAGAGTAGTAGCAATAGTAGTAGTAGTAGTTGGAAGCTTGTTTCTGAGACAAAGGCACATGAAATGGCTGTTTTATGCATAGAAGCTTTTGGTAAGCTTTGTAAAGTTGGTGTGATTAGTGGCCATGAAGGTCCAGTGAAGTGTTTGCAAGCTTCATGTTCTAATAGAATTGGTGGAGGATTTTTGCTCTATAGTGGAAGCCTTGATAGAAGTGTGAGAGTTTGGTGGGTTCCTAAGTATAGTAACAACAATGATATTGAAGAAATAGAGAAGGATAATAACAAGTCTATTGTTTCATGTTAA 1512 0.4134 MNSFLPKPKLSNPLNSPVPKTKLSTSMDSTLSQDPIFSILSKTNLSSVPIDSHFSKTKLSNPTNKLSSTPSDSPVSITKLCSATPMDSPTSKTPLSAPPPLSAASSSISSSSICSDRSSETDESPFSSHRFELQDVKFQLPIQSTPTPSSNSHSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSIKALVSIGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVHNGLIYSGSWDKTLKVWNLSDLKCLESIKAHDDAINGLVACRRGIVYSASADGKIKAWGMEREREGGKFKKSNKNSHCLKGVLEGHKDVSLNSVVVSDDGKWVYGGGSDGYVMGWECSESSSNSSSSSWKLVSETKAHEMAVLCIEAFGKLCKVGVISGHEGPVKCLQASCSNRIGGGFLLYSGSLDRSVRVWWVPKYSNNNDIEEIEKDNNKSIVSC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01245 503 Gene3D - 261 365 IPR015943 GO:0005515
Aip03g01245 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 312 IPR001680 GO:0005515
Aip03g01245 503 SUPERFAMILY WD40 repeat-like 156 485 IPR036322 GO:0005515
Aip03g01245 503 MobiDBLite consensus disorder prediction 54 126 - -
Aip03g01245 503 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Aip03g01245 503 PRINTS G protein beta WD-40 repeat signature 466 480 IPR020472 -
Aip03g01245 503 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Aip03g01245 503 MobiDBLite consensus disorder prediction 54 121 - -
Aip03g01245 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 478 IPR001680 GO:0005515
Aip03g01245 503 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 99 494 IPR045182 -
Aip03g01245 503 SMART WD40_4 266 303 IPR001680 GO:0005515
Aip03g01245 503 SMART WD40_4 361 401 IPR001680 GO:0005515
Aip03g01245 503 SMART WD40_4 194 231 IPR001680 GO:0005515
Aip03g01245 503 SMART WD40_4 306 344 IPR001680 GO:0005515
Aip03g01245 503 SMART WD40_4 435 479 IPR001680 GO:0005515
Aip03g01245 503 SMART WD40_4 154 191 IPR001680 GO:0005515
Aip03g01245 503 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Aip03g01245 503 Gene3D - 366 503 IPR015943 GO:0005515
Aip03g01245 503 PANTHER OS01G0946100 PROTEIN 99 494 - -
Aip03g01245 503 Gene3D - 147 260 IPR015943 GO:0005515
Aip03g01245 503 Pfam WD domain, G-beta repeat 439 478 IPR001680 GO:0005515
Aip03g01245 503 Pfam WD domain, G-beta repeat 275 303 IPR001680 GO:0005515
Aip03g01245 503 Pfam WD domain, G-beta repeat 366 400 IPR001680 GO:0005515
Aip03g01245 503 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01245 Aip-Chr3 12338666 12340519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01245 263 478 Miscellaneous Gene Families AT5G08390 20.968 2.02e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01245 - - lang:109353136 606.675