Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01228 ATGGCTGTTGAGGCTTCTGACAAACCAGTTTTGCCCAACAAGTTTGATGATGACGATGATGATAATATGCCATTAACTATAAAACGGTACTCATCGAATAAGAAAAGCCAATTGCATTCAGATGTAAAGAAGTCAACTTCACATAGTCAAGATGGTCATACATACAAGAGGATTTCTGGCGTGCCTTCTTCAAATGGTCAATCTTCTAGCTCTAGTGCACAGAGGGGTAATAATTTCTCATCTGCTAAGGCTTCATCATTAAGATCCCCCCCATCTTCAAGCTCTAATGCACAAAAGGGTAGTGCTGCTCCATCTGCTAAGGTGTCACCCTTGAGGTCACCATCGTCTTCAAGCTCTAGTGCACAGAAGGGTAATACTGTTCCATTGGCTAAGGCTTCGCCTTTGACATCTCCTTTGAGATCTCCTGTAGGTGTCTCAAAACGACCAAATTCACTTGCCAACTCCACTTCTGCCAAGTTGCCTATGGCGAATTCAAAACCTCCTCATCCAGCAGATAAACCAAAGCCTCTTATTAATCAGAAAGTGTCTGGTGATCTTAAAAAGGAAACAAAATCAATCAAAGATTCTTCAAAGAATTATTCTGAAGATTCAGAGGATGAGGAGGATAATAAACCATTGAGTGCTAGGTTGAAGGTGAACAGTAACCACAACAAAGCAACCCCGGTCATCATCAAGAAGTCTGTTGATGATTCTGATTCTGATGATAATGTCCCTTTGTCAACAAAGATAAACTGGAATGCAAACATGGGAACATCTAGTAGTAATTATGACAAATCTGATCAGAAAAAGCCTATTCCGAAAGTTCAGAAAGAGCCACAAAATGGTTCTGGTGCAAGTAATAAAAGACCCATAGATAACAGTAATTCCATGAACTCTTCTGCAAAGAAGTCAAAGATTTCAGAGCCAGCCTTGTCAGTGAAGCCTAAGCAAAGCTCTCTGAAAGTTGAGCCAAAGGTAGAGGATGATGATGATGATGTACCTATTTCCCAGAGAATCAAGAAATCGGCCACATCAGCTAATAAATCATCTTCTATAAAACAGGTGACAAAGATCACTAAAGTTAATAAGGCTAGTACCAAATCTTTTAAGAAACAAGCCAAGAACAAGAAGTTGAAAAAATCAGGAAGTGGTTCAGAATATTCCAAATCCACTAAACTTCTTCCTAGCTCTGGTGATGGCCAGAAAAAATGGACAACTTTGGTTCACAATGGCGTCATTTTCCCACCTCCTTACAAGCCCCATGGGATAAAGATGCGCTACAAGGATCAAGATGTTGATTTAACTCCCGAGCAAGAGGAGGTTGCAACAATGTATGCAGTCATGCTAGAAACAGATTACATGCTGAAAGAAAAGTTCAAGGAAAATTTCTGGACTGACTGGCGTAAATTGCTAGGAAAGAATCATGTAATTCAGAATTTGAAAGATTGTGACTTTAGACCAATTTACAACTGGTACCAAAGTGAAAAGGAAAAGAAAAAACAAATGACTGCAGATGAGAAGAAGGCCTTGAAGGAGGAGAAAATAAAACAAGAAGAGAAATACATGTGGGCCATTGTTGATGGTGTGAAAGAGAAGGTTGGTAATTTCAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGGGAGCATCCTAAGATGGGAAAATTGAAAAGGCGCATTCATCCAAGTGATATCACAATTAATATTGGAAAGGATGCTCCAGTTCCTGAATGTCCTATTCCTGGCGAAAAGTGGAAGGAGATAAGGCACGACGATACAGTTACATGGTTAGCCTTTTGGAATGACCCAATCAATCCAAAGTTATTCAAATACGTGTTTCTAGCAGCTAGTAGTGCCCTAAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAAGCCAGGATGTTGAAGGATTATATAGAGAACATTAGGGCTGCTTACACAAAAGATTTTAAGAGTAAAGATATTACTAAGCAGCAAATTGCTGTTGCTACTTATCTTATTGATAAATTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGTTGTACATTAAAAGTGGAGAATGTGACCAGAGAAGCTCCCAACAAACTGAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAGAATACAGTTGAGGTTGAGCTTCCTGTTTATGATGCAATTTTGAAGTTCCAAAAAGATAAGCGCCCCGGTGATGATCTTTTTGACAAGTTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGCCTAACTGCAAAGGTCTTCCGTACATTCAATGCATCTATCACGTTGGATGATATGTTGAATAAGGAAACTAAAGAGGGTGATGTTGTCGAAAAGATTCTTGTTTATCAACATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAACGCAGTGTTTCAAAATCTCACTCGTCACAAATTGAAAGGTTAACAAACAAGATTGGTGAGCTTAAGGATGTTCTGAAGGAGCTAAAGACAGATTTGGACAGAGCAAGGAAAGAAAAGCCCCCTCTAAAGGGTTCAGATGGAAAGACAAAAAGGAACTTAGCCCCTGAAGCGCTAGAGAAAAAGATCTCTCAAACCAATGCAAAGATTGAGAAAATGGAACGTGAAATGAAGACAAAAGAAGATCTGAAAACTGTGGCATTGGGCACGTCCAAGATAAACTATCTTGACCCTAGGATTACAGTTGCCTGGTGCAAACGGCATGAGGTTCCCATTGAAAAGATATTCAACAAATCGTTGCTGGCAAAATTTACTTGGGCAATGGATGTGGATCCTGAATTCAGATTCTGA 2841 0.396 MAVEASDKPVLPNKFDDDDDDNMPLTIKRYSSNKKSQLHSDVKKSTSHSQDGHTYKRISGVPSSNGQSSSSSAQRGNNFSSAKASSLRSPPSSSSNAQKGSAAPSAKVSPLRSPSSSSSSAQKGNTVPLAKASPLTSPLRSPVGVSKRPNSLANSTSAKLPMANSKPPHPADKPKPLINQKVSGDLKKETKSIKDSSKNYSEDSEDEEDNKPLSARLKVNSNHNKATPVIIKKSVDDSDSDDNVPLSTKINWNANMGTSSSNYDKSDQKKPIPKVQKEPQNGSGASNKRPIDNSNSMNSSAKKSKISEPALSVKPKQSSLKVEPKVEDDDDDVPISQRIKKSATSANKSSSIKQVTKITKVNKASTKSFKKQAKNKKLKKSGSGSEYSKSTKLLPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKMRYKDQDVDLTPEQEEVATMYAVMLETDYMLKEKFKENFWTDWRKLLGKNHVIQNLKDCDFRPIYNWYQSEKEKKKQMTADEKKALKEEKIKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPSDITINIGKDAPVPECPIPGEKWKEIRHDDTVTWLAFWNDPINPKLFKYVFLAASSALKGQSDKEKYEKARMLKDYIENIRAAYTKDFKSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYDAILKFQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKETKEGDVVEKILVYQHANKQVAIICNHQRSVSKSHSSQIERLTNKIGELKDVLKELKTDLDRARKEKPPLKGSDGKTKRNLAPEALEKKISQTNAKIEKMEREMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPEFRF 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01228 946 MobiDBLite consensus disorder prediction 10 25 - -
Aip03g01228 946 MobiDBLite consensus disorder prediction 52 132 - -
Aip03g01228 946 MobiDBLite consensus disorder prediction 139 162 - -
Aip03g01228 946 MobiDBLite consensus disorder prediction 320 337 - -
Aip03g01228 946 CDD Topo_IB_C 623 816 IPR013500 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 MobiDBLite consensus disorder prediction 338 366 - -
Aip03g01228 946 Coils Coil 866 893 - -
Aip03g01228 946 Gene3D - 766 946 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Aip03g01228 946 SMART topeu 543 919 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Aip03g01228 946 Coils Coil 822 849 - -
Aip03g01228 946 MobiDBLite consensus disorder prediction 279 314 - -
Aip03g01228 946 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 403 614 IPR008336 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 MobiDBLite consensus disorder prediction 182 214 - -
Aip03g01228 946 Pfam C-terminal topoisomerase domain 878 946 IPR025834 -
Aip03g01228 946 PANTHER DNA TOPOISOMERASE I 171 946 - -
Aip03g01228 946 CDD Topoisomer_IB_N 403 615 - -
Aip03g01228 946 MobiDBLite consensus disorder prediction 34 51 - -
Aip03g01228 946 MobiDBLite consensus disorder prediction 1 400 - -
Aip03g01228 946 PRINTS Eukaryotic DNA topoisomerase I signature 899 910 IPR001631 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 PRINTS Eukaryotic DNA topoisomerase I signature 659 678 IPR001631 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 PRINTS Eukaryotic DNA topoisomerase I signature 704 720 IPR001631 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 PRINTS Eukaryotic DNA topoisomerase I signature 682 696 IPR001631 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 PRINTS Eukaryotic DNA topoisomerase I signature 762 776 IPR001631 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 PRINTS Eukaryotic DNA topoisomerase I signature 543 552 IPR001631 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 PANTHER DNA TOPOISOMERASE I 171 946 - -
Aip03g01228 946 Pfam Eukaryotic DNA topoisomerase I, catalytic core 617 842 IPR013500 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 MobiDBLite consensus disorder prediction 244 266 - -
Aip03g01228 946 MobiDBLite consensus disorder prediction 384 400 - -
Aip03g01228 946 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 892 910 IPR018521 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 Gene3D - 419 502 IPR013034 GO:0003917|GO:0006265
Aip03g01228 946 Gene3D DNA Topoisomerase I, domain 2 399 614 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Aip03g01228 946 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 398 615 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Aip03g01228 946 MobiDBLite consensus disorder prediction 843 865 - -
Aip03g01228 946 Gene3D Topoisomerase I; Chain A, domain 3 617 765 IPR014711 GO:0003677|GO:0003917|GO:0006265
Aip03g01228 946 SUPERFAMILY DNA breaking-rejoining enzymes 617 943 IPR011010 GO:0003677
Aip03g01228 946 Coils Coil 492 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01228 Aip-Chr3 12160506 12168466 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01228 K03163 - gmx:100799837 1281.54