Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01160 ATGGTGAGCGACTATTACTCCGAATTTATTGCTTTAGCTAATCGCACACAGATCGATCCACCTGATGCATTGGAGGATTGTTTTATTAGTGGGTTAAAATCTGATATTAGACGAGAGGTGAAGGCACAATGCCCTCCCTCCCTGATGCGTGCGGTCACATTAGCTAGACTTTACGAGGACAAGTTTTCTTCAGTACCGATAAGCACTTATGGTCCGGCCTCGCCCCGTCCTCAGCCGACTCCTGCAGTTGCAATTTCGAGTAATAGGCCCATTCAGCGGAATACTCTGCCACCGTTGCTTCCGAATCCACCCCAGCGTCCTGCCTTACCGTTGATGAAAAGCTCCGTGCGAAAACTGTCCCCGGCGGAGATTCATAGCAAATGGGAGAAGGGATTATGTTACTGGTGCGATGAGAAATTTTCAGCTGCTCACCGTTGCCCGAATCGCCAGTATATGCAGCTGCAACTAGTGTTAGATGATGCAGATGGAGGGGACACAGGGATGCAAGAGTCATTGGAATCTAAGCCCAGTTTGGAGGCCTTGGAGTCTCAAGTAGTTGAGCATCATTTTTCTTACAATGCTATGCATGGTACAAGTGGTCCTGCTTTGATCCTTGTTAACGTTATCATCAATGGGCTAAAGGTCCATGCCCTGATTGATGGTGGCAGTTCGGATAGTTATATTCAACCTCGCATAGCCAAATTTTTGAATCTACGTATTGAACCTGCATTGGGATTTAAGGTGATAGTGGGCAGTTTTGAAGTCTTGCCGGTAGAGAGTCACATTGCTAGTTTGGATGTTAATCTATCAGGTTGCCTTGTTAGCATTCCAGAGGTTTACGTGCTCCATGTGGCTAAGGGAGAGTTGGTGATTGGTTCAACTTGGTTACAAACATTGAAGGCTCATATTGTAGACTATAATTCTTCATTTCTTCACTTCTGGCATAAAGGGGAATTTGTCGCTGTGCAAGGTTATAAGAGTCCACCTTCATCTCAAGCTCAATTTCATCATATACGAAGGTTAGTAAGCACCGATGTAGTGGCTGCAGTGTTTACTCTTGAACTTCAGCAATTGGATCGAATTGTCAAGCCACCCTTGCAGTTACCAAAAGCTCTTCACCCTGCCTTGAAGAAGTCAGCTTACATAAGAGAGTTTTACGCCATCACTGAGGCCTTAGCTAAGTTTCGCCATTACTTGCTACGCAAAAGATTTATCTTGCACACTGATCACCAAAGCTTGAAAGCACTATTAGAACAAGATCTTCATACACCAGAGCAACATAAATGGCTTCATAAATTGCTCGGTTTTGATTTTGAAATCCATTACAAGGCTGGGACTGAAAATGTTGCAACGGATGCATTCTCTCGCAGCTTCTTTGGGGCTTGGTCTGCGCCAAGAGTAGAGTGGCTAGACCAACTTCGTACAGAATTGGTGGCGGATGAGGATCTCCGAGTATTATTGGCAAAGTGCAACTCCAATTCAGAGAGAAAGCCACATGGTGAGATTGGGAGTGCAAGGGAGCCTCTTCTTAATGTGTCCCATGATTCTGAAAAGTATTCTGTATCTGCTGCGATTTTCCCGTTTTTCTTCCCAGCTCTTGGTGGGCTGCTGTATGGCTATGACATAGGCTCTACATCGTGTGCAACAATTTCCATTGAGTCGCCAACACTAAGTGGAGTATCTTGGTACAACTTGTCCTCCATTGAAATTGGTCTTGTTACTAGTGGATCATTATATGGTGCCTTAATTGGTTCTGTTTTGGCCTTCAATGTTGCTGACTTCCTAGGTAGAAGAAGGGAGCTGGTTTCAGCGGCATTGTTATATCTTGTCGGAGCACTCGTAACAGCACTAGCTCCAAATCTTCCTATATTGGTGATAGGAAGATTTGTTTATGGTATAGGAATTGGATTGGCAGGTTATGGAATTGGTAGCCTTCTGGTAGACACGGTAGCTGGGTGGCGGTATATGTATGGAGTTAGTAGTCCTTTGGCAGTAATCATGGGAATTGGAATGTGTTGGCTCCCAGCTTCTCCTAGATGGCTACTTTTATGTGCTATACAGGGGAAAGGGGATGGAGAGAATTTGAAAAGCACCGCAATTCATTGTCTATGCCGTATTCGAGGTCAAGCTGTTGATGACTCAGCTCATCGGCAAGTGGATGAAATTCTGGCTGAGCTTGCTTATGTGGGTGAAGAAAAAGAGGTTACTTTTGGAGAAATGTTCAGAGGAAAATGCTTGAAAGCCCTTACCATTGGTGCAGGATTGGTCTTGTTTCAACAGATCACAGGGCAACCAAGTGTGCTTTACTATGCTGGATCAATCCTTCAGAGTGCAGGATTCTCCGCTGCATCTGATGCAACCCGAGTCTCTATTCTCCTTGGTTTTTTCAAGTTGATTATGACCGGAACTGCTGTCGCTGTTGTCGATAAAGTTGGAAGAAGACCTTTACTACTGGGAGGAGTTTCAGGGATGGCAGTATCTTTATTCCTTCTGGGTTCATATTACATTTTCTTAGATGATGCTGCAGTCGTTGCTGTAATTGGTCTGCTGTTATATGTTGGCTGTTATCAGATTTCGTTTGGTCCAATTGGTTGGCTAATGATATCAGAGGTTTTCCCCTTGCGCTTAAGAGGTCGCGGACTCAGTATCGCTGTACTTGTTAACTTCGGCGCAAATGCTCTTGTGACATTTGCTTTCTCCCCACTGAAGGAGTTACTGGGAGCAGGAATTTTGTTTTACATATTTTGTGCAATAGCAGTGGGATCTCTTGTATTCATATACTTCATTGTACCTGAAACCAAGGGACTTACCCTTGAGGAGATTGAGGCCAAATGTCTATAA 2841 0.4442 MVSDYYSEFIALANRTQIDPPDALEDCFISGLKSDIRREVKAQCPPSLMRAVTLARLYEDKFSSVPISTYGPASPRPQPTPAVAISSNRPIQRNTLPPLLPNPPQRPALPLMKSSVRKLSPAEIHSKWEKGLCYWCDEKFSAAHRCPNRQYMQLQLVLDDADGGDTGMQESLESKPSLEALESQVVEHHFSYNAMHGTSGPALILVNVIINGLKVHALIDGGSSDSYIQPRIAKFLNLRIEPALGFKVIVGSFEVLPVESHIASLDVNLSGCLVSIPEVYVLHVAKGELVIGSTWLQTLKAHIVDYNSSFLHFWHKGEFVAVQGYKSPPSSQAQFHHIRRLVSTDVVAAVFTLELQQLDRIVKPPLQLPKALHPALKKSAYIREFYAITEALAKFRHYLLRKRFILHTDHQSLKALLEQDLHTPEQHKWLHKLLGFDFEIHYKAGTENVATDAFSRSFFGAWSAPRVEWLDQLRTELVADEDLRVLLAKCNSNSERKPHGEIGSAREPLLNVSHDSEKYSVSAAIFPFFFPALGGLLYGYDIGSTSCATISIESPTLSGVSWYNLSSIEIGLVTSGSLYGALIGSVLAFNVADFLGRRRELVSAALLYLVGALVTALAPNLPILVIGRFVYGIGIGLAGYGIGSLLVDTVAGWRYMYGVSSPLAVIMGIGMCWLPASPRWLLLCAIQGKGDGENLKSTAIHCLCRIRGQAVDDSAHRQVDEILAELAYVGEEKEVTFGEMFRGKCLKALTIGAGLVLFQQITGQPSVLYYAGSILQSAGFSAASDATRVSILLGFFKLIMTGTAVAVVDKVGRRPLLLGGVSGMAVSLFLLGSYYIFLDDAAVVAVIGLLLYVGCYQISFGPIGWLMISEVFPLRLRGRGLSIAVLVNFGANALVTFAFSPLKELLGAGILFYIFCAIAVGSLVFIYFIVPETKGLTLEEIEAKCL 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01160 946 ProSitePatterns Sugar transport proteins signature 1. 804 820 IPR005829 GO:0016021|GO:0022857|GO:0055085
Aip03g01160 946 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 502 638 - -
Aip03g01160 946 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 638 946 - -
Aip03g01160 946 Pfam Sugar (and other) transporter 637 943 IPR005828 GO:0016021|GO:0022857|GO:0055085
Aip03g01160 946 ProSiteProfiles Major facilitator superfamily (MFS) profile. 527 934 IPR020846 GO:0022857
Aip03g01160 946 PRINTS Sugar transporter signature 625 644 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g01160 946 PRINTS Sugar transporter signature 535 545 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g01160 946 PRINTS Sugar transporter signature 759 769 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g01160 946 PRINTS Sugar transporter signature 869 881 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g01160 946 PRINTS Sugar transporter signature 846 867 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g01160 946 SUPERFAMILY DNA/RNA polymerases 330 443 IPR043502 -
Aip03g01160 946 ProSitePatterns Sugar transport proteins signature 1. 588 605 IPR005829 GO:0016021|GO:0022857|GO:0055085
Aip03g01160 946 SUPERFAMILY Acid proteases 199 302 IPR021109 -
Aip03g01160 946 CDD retropepsin_like 206 297 - -
Aip03g01160 946 Pfam RNase H-like domain found in reverse transcriptase 379 436 IPR041373 -
Aip03g01160 946 Gene3D MFS general substrate transporter like domains 517 639 IPR036259 -
Aip03g01160 946 Gene3D MFS general substrate transporter like domains 640 944 IPR036259 -
Aip03g01160 946 CDD MFS_GLUT10_12_Class3_like 530 941 - -
Aip03g01160 946 Gene3D Acid Proteases 184 320 IPR021109 -
Aip03g01160 946 CDD RNase_HI_RT_Ty3 370 456 - -
Aip03g01160 946 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 1 502 638 - -
Aip03g01160 946 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 1 638 946 - -
Aip03g01160 946 SUPERFAMILY MFS general substrate transporter 519 942 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01160 Aip-Chr3 11471819 11484556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01160 497 946 Organic Solute Cotransporters AT5G17010 70.455 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01160 - - lja:Lj3g3v3639770.1 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01160 03 11471819 11484556 Aip03g01160 03 11471819 11484556 ECH