Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01152 ATGGGTCAAACGTTTCGTAAACTGTTTGATTCCTTCTTTGGCAACACTGAGATGCGGGTTGTGATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATACTCTACAAGCTGCACATTGGAGAAGTTCTATCAACTGTTCCTACAATTGGTTTCAATGTGGAGAAGGTTCAGTATAAAAATGTTGTATTCACAGTTTGGGATGTCGGAGGTCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAACACAGATGGTCTGATATATGTTGTTGACAGTCTTGACCGAGAGAGACTTGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAATGACCCATTTATGCTCAACAGTGTCATCTTGGTGTTTGCCAACAAACAGGATCTGAGAGGAGCAATGACACCAAGGGAGGTATGTGAAGGATTAGGCTGCTGGATACTCTTCAATAGCACTAGGAACCTCATCCTTCTAATTTTCCAGCTATTTTGGCCTTAG 498 0.4157 MGQTFRKLFDSFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERLGKAKQEFQTIINDPFMLNSVILVFANKQDLRGAMTPREVCEGLGCWILFNSTRNLILLIFQLFWP 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01152 165 SMART rab_sub_5 18 162 - -
Aip03g01152 165 TIGRFAM small_GTP: small GTP-binding protein domain 16 137 IPR005225 GO:0005525
Aip03g01152 165 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Aip03g01152 165 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Aip03g01152 165 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Aip03g01152 165 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Aip03g01152 165 Pfam ADP-ribosylation factor family 6 145 IPR006689 GO:0003924|GO:0005525
Aip03g01152 165 Gene3D - 3 157 IPR027417 -
Aip03g01152 165 SMART sar_sub_1 3 163 IPR006689 GO:0003924|GO:0005525
Aip03g01152 165 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 150 IPR024156 GO:0005525
Aip03g01152 165 SMART arf_sub_2 1 156 - -
Aip03g01152 165 PANTHER ADP-RIBOSYLATION FACTOR B1C 1 150 - -
Aip03g01152 165 ProSiteProfiles small GTPase Arf family profile. 11 165 - -
Aip03g01152 165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 151 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01152 Aip-Chr3 11393372 11395627 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01152 K07937 - gmx:100791271 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01152 03 11393372 11395627 Aip03g01152 03 11393372 11395627 ECH