Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01059 ATGGAGAGAAGAGTGAATAACGGTTCATCAGCAAAGAATGGACAGGTTCTAGACGGTTCCAATATAATGGAGTTGGTTGGGAACGAGGCAGTGTTCAGCAACTTCGTGGACCATAAGTTTCAGGAGCTGGATAGAGACAGAGATGGCAAGCTTTCTGTGAAGGAACTTCAACCTGCTGTTGCTGATATTGGTGCTGCTCTTGGTCTCCCTGCTCAGGGTTCTAACCCTGATTCTGACCACATCTATTCTGAGGTGTTGAATGAGTTCACACATGGCAAGCAAGAAAAAGTGAGCAAGAGTGAGTTCAAGGAGGTTCTGTCAGACATTCTGTTGGGTATGGCTGCTGGTTTGAAGAGAGATCCAATTGTGATTCTACGCATTGATGGTGAAGATCTTCTTGAGTTTCTTAATGGCCCAAGTTATGAAGCTGAAATGGCATCCATATTCTCTCAGATTGGTTCCCCTCAAAAATCACTTCGTCACCATATAGTTGAAGCTCTTTCTAAACTCACTGTTGATCAAGGAATTCCTCCTGCTTCAGATTCTTGGGTGTTTAGCAACATTGTGGAACCTGTACTGTTATCTCAAGGTGGACCTGATTGGGATAAGCCTCTTGCTTCTGAAAATCAAGAGACATTTTTGGAGGGGTTTAAGAAAGTTGCATTAAGTGTAGCTGAACGGCTTAAGGAGCAACCTGTCATTGTTGCTCATAGCGAAAACACCTTTGATGGATCTGGTGTTAAGAGACTACTATCCAACAAGTTTGAATTTGACAAGACTTTGAATTCAGTTGTAGAGAATTTGCCTAAAGATAAGAATGGAAAAATTTCAAAGGAGTATCTACGGCTAGCACTAGATGGAGTGTCTCCATCTGCTGGATTACCACCATTTGGTGCAATTGAAGAGATGGATAAGGTTATTGGAGAAGTGTTCAAGATGATGAATGCAGATGATGCAAAGATGGTTAAAGAAGATGAATTCAAGAAACTGTTAACTGAAATACTAGGAAGTATTATGTTGCAGCTTGAGGGAAATCCCATATCAGTTTCTTCCAACTCTGTAGTGCATGAGCCTCTTGGTTCTTCTTCTTCACTTCTCAAGCCATCAACTACTGAAACAGCAGCATAA 1128 0.4158 MERRVNNGSSAKNGQVLDGSNIMELVGNEAVFSNFVDHKFQELDRDRDGKLSVKELQPAVADIGAALGLPAQGSNPDSDHIYSEVLNEFTHGKQEKVSKSEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFLNGPSYEAEMASIFSQIGSPQKSLRHHIVEALSKLTVDQGIPPASDSWVFSNIVEPVLLSQGGPDWDKPLASENQETFLEGFKKVALSVAERLKEQPVIVAHSENTFDGSGVKRLLSNKFEFDKTLNSVVENLPKDKNGKISKEYLRLALDGVSPSAGLPPFGAIEEMDKVIGEVFKMMNADDAKMVKEDEFKKLLTEILGSIMLQLEGNPISVSSNSVVHEPLGSSSSLLKPSTTETAA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01059 375 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 9 373 - -
Aip03g01059 375 Pfam EF-hand domain pair 39 105 IPR002048 GO:0005509
Aip03g01059 375 SMART efh_1 35 63 IPR002048 GO:0005509
Aip03g01059 375 SMART efh_1 260 288 IPR002048 GO:0005509
Aip03g01059 375 SMART efh_1 306 334 IPR002048 GO:0005509
Aip03g01059 375 SUPERFAMILY EF-hand 39 345 IPR011992 -
Aip03g01059 375 ProSitePatterns EF-hand calcium-binding domain. 44 56 IPR018247 -
Aip03g01059 375 ProSiteProfiles EF-hand calcium-binding domain profile. 31 66 IPR002048 GO:0005509
Aip03g01059 375 Gene3D - 10 117 - -
Aip03g01059 375 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 9 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01059 Aip-Chr3 10370553 10374140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01059 1 373 EF-hand Containing Proteins AT4G38810 67.380 1.27e-177 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01059 - - gmx:100820516 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01059 03 10370553 10374140 Aip03g01059 03 10370553 10374140 ECH