Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01033 ATGATAAATGGCCAATGCATGTTTGGACATTTGAGTGCCGCCGAGTCTTTGTTCGCTCGGATGATCAATAATGGTTTGGAGCCTACTGCGACAACCTTTACGCCGTTGATTAGTAGATATTGCAAAGATCTACAACTACGAAAAGCATTCCAACTGTATGATATGATGATTGAAAAAGGAATTGCCCCAAATGTGTATACCTTCACTGCGCTTATTTCTGGGTTTTGCAGTGCAAATAATATGACTGAAGCATTCAAACTTTTTGTTGAAATGGTGGAAAAAAAAATCACCCCAAATGAGGTAACATATAATGTTATGATTGAAGGGTATTGTAGGAATGGTAAAATTGACAAGGCCTTTGAATTACTTGATGAGATGCTTCAGAAAGGCCTTGTTCCGGACACATATACCTACAGACCTCTTATCAGTGGCCTTTGTTCTGCTGGCAGGGTTTCAGATGCTAAAAATTTTGTTGATGTTCTACACAAACAGGACCGTAAATTAAACGAGATGTGCTATAGTGCACTTCTACATGGTTATTGCAAAGAAGGAAGATTGGTGGAGGCATTGAGCGCTGCTTCTGAGATGATTCAAAGAGGAATCAATGTAGATTTGGTTTGCCATGCTGTTCTCATCGACGGTTCACTGAAGCAACTAGATAGGAAAACACTATTTGGTCTCTTAAAACAGATGCAGGATCAAGGATTGAAACCTGATAATGTAATATATACAAGTATGATCGATGCATTCAGCAAAGAAGGATCTTTCGAGAAGGCTTTCCAGTGTTGGGATTTGATGCTTACGGAGGAATGCTTTCCCAATGTTGTAACGTATACTGCTTTGATGAATGGTCTATGCAAGGCGGGTGAAATGGACAGAGCAGGTCTTCTCTTTAAAAAAATGATGGCTGCAAATGTCCCTCCAAATTCAATCACATATGGCTGTTTTCTTGATCGTCTTACCAGCGAAGGGCATATGGAGGAAGCTATGGGTCTCCACCATGCAATGCTTAAAGGGCTTTTGGCGAACACTGTAACATACAACATCCTTATTCGTGGCTTCTGCAAGTTAGGTAGATTTAACGAAGCCAGCAAGGTGCTTTCTGAAATGACCGAAAATGGCATTTTCCCCGACTGTATTACCTATTCAACTTTAATTTATGAGTACTGCAGAAGTGGCAACGTAGGAGAAGCAGTCAGATTGTGGGATACCATGCTAAACAAAGGTCTTGAGCCGGACTTGGTTGCATATAACTTGTTACTATATGGTTGTTGTATTAATGGAGAGCTCAACAAAGCATTTGAGTTGCGCGATGACTTGCTGAGGAGAGGGGTGAAGCCAAGGCAAAATTTTCGAGTACTGCACAAGGGACAATGTAGGAGCAGTGGTTAA 1392 0.4095 MINGQCMFGHLSAAESLFARMINNGLEPTATTFTPLISRYCKDLQLRKAFQLYDMMIEKGIAPNVYTFTALISGFCSANNMTEAFKLFVEMVEKKITPNEVTYNVMIEGYCRNGKIDKAFELLDEMLQKGLVPDTYTYRPLISGLCSAGRVSDAKNFVDVLHKQDRKLNEMCYSALLHGYCKEGRLVEALSAASEMIQRGINVDLVCHAVLIDGSLKQLDRKTLFGLLKQMQDQGLKPDNVIYTSMIDAFSKEGSFEKAFQCWDLMLTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKKMMAANVPPNSITYGCFLDRLTSEGHMEEAMGLHHAMLKGLLANTVTYNILIRGFCKLGRFNEASKVLSEMTENGIFPDCITYSTLIYEYCRSGNVGEAVRLWDTMLNKGLEPDLVAYNLLLYGCCINGELNKAFELRDDLLRRGVKPRQNFRVLHKGQCRSSG 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Aip03g01033 463 Pfam PPR repeat 408 438 IPR002885 -
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Aip03g01033 463 SUPERFAMILY HCP-like 46 199 - -
Aip03g01033 463 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 99 338 - -
Aip03g01033 463 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 260 - -
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 28 IPR002885 -
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Aip03g01033 463 Gene3D Tetratricopeptide repeat domain 1 80 IPR011990 GO:0005515
Aip03g01033 463 Gene3D Tetratricopeptide repeat domain 217 323 IPR011990 GO:0005515
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Aip03g01033 463 PANTHER - 205 460 - -
Aip03g01033 463 Gene3D Tetratricopeptide repeat domain 81 192 IPR011990 GO:0005515
Aip03g01033 463 Gene3D Tetratricopeptide repeat domain 324 462 IPR011990 GO:0005515
Aip03g01033 463 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 205 460 - -
Aip03g01033 463 SUPERFAMILY HCP-like 250 436 - -
Aip03g01033 463 Pfam PPR repeat 311 338 IPR002885 -
Aip03g01033 463 Pfam PPR repeat 1 26 IPR002885 -
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 172 204 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 415 447 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 101 135 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 345 379 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 136 169 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 66 100 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 1 29 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 32 65 IPR002885 -
Aip03g01033 463 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Aip03g01033 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Aip03g01033 463 Pfam PPR repeat family 98 147 IPR002885 -
Aip03g01033 463 Pfam PPR repeat family 169 214 IPR002885 -
Aip03g01033 463 Pfam PPR repeat family 32 77 IPR002885 -
Aip03g01033 463 Pfam PPR repeat family 343 391 IPR002885 -
Aip03g01033 463 Pfam PPR repeat family 238 287 IPR002885 -
Aip03g01033 463 PANTHER - 1 260 - -
Aip03g01033 463 PANTHER - 99 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01033 Aip-Chr3 10001321 10002712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01033 8 461 Glycosyltransferase AT1G05670 31.947 3.19e-77 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01033 - - adu:107477233 917.531