Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01017 ATGAGAGGCCTCCTTTCAAGTACGAAGCTCATTGCTTCGAAGCTCTTCCATCATCACCATGGAGGAGTAGCAGCAGCAACATCACCACCTCAATTGATGCGGAACATGAGCCTCATTCCAATGGTGATCGAGCACTCCTCCCGAGGAGAGAGAGCCTACGATATCTTCTCCCGACTCCTCAAGGAGCGCATCGTCTGCATCAACGGACCCATCTCCGACGACACCGCACACGTCGTCGTTGCCCAGCTCCTCTTCCTCGAGTCCGAGAACCCTTCCAAGCCCATCCACATGTACCTCAATTCCCCCGGTGGCGCCGTCACTGCAGGTCTTGCTATTTATGATACTATGCAATACATCCGGTCTCCGATTCATACAATTTGTTTGGGTCAAGCTGCATCTATGGGTTCTTTGCTATTGGCTGCGGGTGCTAAGGGTCAGAGGCGCTCTCTTCCAAATGCAACAGTCATGATTCATCAGCCTTCTGGTGGATACAGTGGTCAGGCAAAAGATATTGCTATTCATACCAAGCAGATTGTTCGGATGTGGGATTCCTTGAATGCAATTTATGCAAAGCATACAGGCCAACCAGTTGATATTATTCAGAAGAATATGGATAGGGATTATTTCATGACTGCAGAGGAGGCAAAGGAGTTTGGAATTATTGATGAGGTTATTGATCAAAGACCATTGACTTTGGTTTCAGATGCTGTTACTAGTGAAGACAAAGATAAAGACTCTAGTTAG 744 0.4745 MRGLLSSTKLIASKLFHHHHGGVAAATSPPQLMRNMSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVTAGLAIYDTMQYIRSPIHTICLGQAASMGSLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDIAIHTKQIVRMWDSLNAIYAKHTGQPVDIIQKNMDRDYFMTAEEAKEFGIIDEVIDQRPLTLVSDAVTSEDKDKDSS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01017 247 PRINTS Clp protease catalytic subunit P signature 54 69 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip03g01017 247 PRINTS Clp protease catalytic subunit P signature 94 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip03g01017 247 PRINTS Clp protease catalytic subunit P signature 125 142 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip03g01017 247 PRINTS Clp protease catalytic subunit P signature 146 165 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip03g01017 247 PRINTS Clp protease catalytic subunit P signature 203 222 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip03g01017 247 ProSitePatterns Endopeptidase Clp histidine active site. 147 160 IPR033135 -
Aip03g01017 247 Pfam Clp protease 48 227 IPR023562 -
Aip03g01017 247 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 31 245 IPR023562 -
Aip03g01017 247 ProSitePatterns Endopeptidase Clp serine active site. 125 136 IPR018215 -
Aip03g01017 247 Gene3D - 29 232 - -
Aip03g01017 247 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 31 245 - -
Aip03g01017 247 CDD S14_ClpP_2 54 224 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aip03g01017 247 SUPERFAMILY ClpP/crotonase 46 228 IPR029045 -
Aip03g01017 247 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 38 228 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01017 Aip-Chr3 9741267 9743195 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01017 K01358 - jre:108988528 390.193