Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00987 ATGAACATCTCTTTATGCATCATAACACTACTACTGTTGCACTTGGGCTTATTTTTAGGGGCAAGCTTAGCCTACTCCTCAAGCTTCAACTATGGTGATGCTGTTGACAAGAGCTTGATGTTCTTTGAAGCCCAAAGGTCTGGTAAATTGCCACCTCAGCAGCGAGTCAAGTGGCGCGGTGATTCTGGCCTCAATGATGGACTTTCACAAGGAGTGGACCTTGTGGGAGGGTACTATGATGCTGGGGATCATGTGAAGTTTGGGCTGCCAATGGCATATAGTGTGACAATGCTTGCATGGGGAGCCATTGAGTTCAGAAAAGAGATCACTGACTTGAACCAAATGGGACACACTTTGTGGGCCATTAAATGGGGAACTGATTACTTCCTCAAAGCACATCCTCAGCCTAATGTTCTTTGGGGACAGGTGGGGGATGGAGCCTCGGATCACTATTGCTGGGAGCGTGCTGAAGACATGACAACTTCAAGAACTGCCTATAAAGTTGATGAAGAGCATCCTGGCTCTGATATTGCTGGTGAAACTGCAGCTGCATTGGCTGCAGCATCCATAGCCTTCAAGCCCTACAACTCTTCTTACTCTAGTCTTCTCCTAATTCATGCAAAACAGCTCTTCACATTTGCAGATAGGTTCAGAGGTCTATATGATGATTCCATAACTAGTGCTCAGCAATTCTACACTTCTTCCGGTTACTCAGATGAACTATTATGGGCTGCAGCATGGTTGCATCAAGCAACTGATGATGAATACTACCTAAAGTATGTAGTGGACAATGCTGTGTACATGGGTGGAACTGGCTGGGCAGTGAAGGAGTTCTCTTGGGACAATAAATATGCCGGTGTACAAATCCTCTTGTCGAAGGTGTTACTAGAAGGAAAGGCTGGTTCATATGCCTCTACACTAAAGCAGTACCAAGCCAAGGCAGATTATTTTACCTGTGCTTCCTTGCAAAAGAATGATGGTTACAGTGTCCAGAAGACTCCAGGTGGTCTAGTATACGTGCGCGAATGGAACAACATGCAGTATGTTTCTTCTTCTGCATTTCTCTTGGTTGCTTACTCTAAGTATCTATCAGATGCAAAAACTCAGATTATTTGTCCAGATGGACAAGTTCAGCCTCAGGAGCTCCTCAATTTTGCAAAATCACAGGCATGTCATATAACTATATTCTATTGGATTTTTGCTGATTACATCCTTGGCAAAAACCCTGAGGGTATGAGCTACTTGGTTGGATCTGGACCAAAATATCCTGTACATGTTCACCACAGAGGGGCTTCCATTGCTTCAATCTTTTCTATTAGGTCTGAAGTTGGCTGCATCCAAGGATTCGAGACATGGTATCACCGTGCCGAACCGAATCCTAACATAATCTATGGTGCCCTTGTGGGTGGTCCTGATAAAAATGATGAGTTCTCTGATGACAGATCAAATTATGAACAAACTGAGCCTACGCTTTCAGGATCAGCTCCTCTTGTAGGCATCTTTGCTAAACTGCAGAGTTTATATGGCAATTCAGGTGAGGCATATTCTGCACTAAGCAATAATCTACTCATTGTTTGCATATTCCTCTATAAAGCCCCAAGCACTTTTCTTAATTGTGCACCAATTGAGTTCCTTCACTCAATTACTAGCTCATGGACTGTTGGGGCTACAACTTATTACCGCCACAGAGTGATAATCAAGAACACTTCTTTGGAGCCAATAACAGATCTCAAGTTGGTGATTGAGAATCTCTCAGGATCTATATGGGGTCTATCTCCAACAAATGAGAAGAACATTTATGAACTTCCACAATGGCTCAATGTCTTGAATCCTGACTCAGAGTGTATGTTTGTTTATGTTCAAGAAGGACCACAAGCAAAGATCAGTGTTCAAAGCTTCCATTGA 1905 0.4331 MNISLCIITLLLLHLGLFLGASLAYSSSFNYGDAVDKSLMFFEAQRSGKLPPQQRVKWRGDSGLNDGLSQGVDLVGGYYDAGDHVKFGLPMAYSVTMLAWGAIEFRKEITDLNQMGHTLWAIKWGTDYFLKAHPQPNVLWGQVGDGASDHYCWERAEDMTTSRTAYKVDEEHPGSDIAGETAAALAAASIAFKPYNSSYSSLLLIHAKQLFTFADRFRGLYDDSITSAQQFYTSSGYSDELLWAAAWLHQATDDEYYLKYVVDNAVYMGGTGWAVKEFSWDNKYAGVQILLSKVLLEGKAGSYASTLKQYQAKADYFTCASLQKNDGYSVQKTPGGLVYVREWNNMQYVSSSAFLLVAYSKYLSDAKTQIICPDGQVQPQELLNFAKSQACHITIFYWIFADYILGKNPEGMSYLVGSGPKYPVHVHHRGASIASIFSIRSEVGCIQGFETWYHRAEPNPNIIYGALVGGPDKNDEFSDDRSNYEQTEPTLSGSAPLVGIFAKLQSLYGNSGEAYSALSNNLLIVCIFLYKAPSTFLNCAPIEFLHSITSSWTVGATTYYRHRVIIKNTSLEPITDLKLVIENLSGSIWGLSPTNEKNIYELPQWLNVLNPDSECMFVYVQEGPQAKISVQSFH 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00987 634 Gene3D - 26 517 IPR012341 GO:0005975
Aip03g00987 634 Pfam Glycosyl hydrolase family 9 31 500 IPR001701 GO:0004553|GO:0005975
Aip03g00987 634 SUPERFAMILY Six-hairpin glycosidases 28 511 IPR008928 GO:0005975
Aip03g00987 634 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 403 429 IPR018221 -
Aip03g00987 634 Pfam Carbohydrate binding domain CBM49 542 621 IPR019028 GO:0030246
Aip03g00987 634 PANTHER ENDO-1,4-BETA-GLUCANASE 10 589 - -
Aip03g00987 634 SMART CBM49_2 542 624 IPR019028 GO:0030246
Aip03g00987 634 PANTHER ENDOGLUCANASE 5 10 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00987 Aip-Chr3 9526789 9531114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00987 29 634 Glycoside Hydrolase AT1G48930 68.197 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00987 K01179 - gmx:100812170 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00987 03 9526789 9531114 Aip03g00987 03 9526789 9531114 ECH