Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00979 ATGAGAAGAGGATTATTTGGAGCTGCCAGTAACCGTAACTGCTTCACTAAGCCGCCACTCATTTCCAGCTCCATCTTCACTCTTCTCAAACCCTTCTGCGCCGTCGCGTCTTCCCCCGCCAGATCTCTTCCTACTTCCGTCGCTTCCGCCGCCGCGATGCCTGGTTCTGACTCGTCCAACCGGGAGTGGCCGGCGAAGCGCGTGAGGGACACTTTCTTTAAGTTCTTCGAAGAAAAGCGCCATGTCTACTGGCGGTCCAGTCCCGTTGTTCCATTCAATGACCCTACCCTATTGTTCGCCAACGCTGGTATGAACCAGTTCAAGCCAATATTTTTGGGGACTGTGGATCCCAACACTGCCTTGAGCAAGCTCACTCGTATGAACCAGTTCAAGCCAATATTTTTGGGGACTGTGGATCCCAAGTCGTTTGGAGATTACTTCAAAGAAGAAGCTATTACTTGGGCATGGGAACTTCTAACAAAAGTCTATAAATTACCATCAGATCGCATTTATGCTACATATTTTGGTGGTGACGAAAACGCTGGTCTTGCCCCTGATAATGAGGCTAGAGATATATGGCTAAAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGAGACTGGTCCTTGTGGACCTTGCACCGAAGTACATTTTGATCGAATTGGAAACCGTGAAGCTTCATCATTAGTTAATAATGATGATCCTACATTAATTGAGATATGGAACCTTGTCTTTATTCAGTATAATAGGGAGGCCGATGCTTCTCTTAAACCTCTTCCAGCAAAGCATGTTGATACCGGCTTGGGTTTTGAACGTTTGACATCTGTACTACAAAACAAAATGAGCAATTATGACACTGATGTCTTCTTGCCAATCTTTGATGCTATTCAGTTGGAAACTGGTGCTAGGCCATATTCTGGTAAGGTTGGGCCAGATGATGCAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGACCACATCAGAACTCTATCATTTGCTATTGCTGATGGGTCTCGTCCTGGCAACGATGGCCGGGAGTATGTTCTTAGGCGTATTCTCCGTCGTGCAGTTCGGTATGGCCGTGAAGTTCTAAAAGCTAAGGAGGGGTTTTTTAACAGGCTTGTAAGTGTTGTGGTCAAGGTGATGGGCGATGTTTTCCCTGAGCTAAAACAACAGGAGGCACACATCAGGGATGTAATTGAAGAGGAGGAGGAAAGTTTTGGCAGAACCTTAATTAAGGGGATTGAGAAATTTAATAATGCTGTTCAACATGTTCAGGACAAACAGCTGAGTGGAGAGGCAACATTTGTCCTCTGGGATACATATGGGTTCCCAATAGATCTCACTAAGGTAGGTTATTTGCTCGACATTATTGAATCCTTGTCATCAAGCATTCTGTATCTTTTATTTCTAAGTATTTCCATCTTTCAGCTGATGGCTGAAGAAAAAGGTTTAACTGTTGATGAAGATGGATATAATAAGGCCTTGGAGGCTGCAAGAGAGCGATCAAGGAATGCTCAAGCAACGCAAGCAGGTGGTGCCATTATCATGGATGCTGATGCTACCTCAATGTTGCACAGAAGGGGCATTGCTCCAACTGATGATAGCTTCAAATATGTTTGGTTCAAGGACCACGAGAGTGTGGTGAAAGCAATATACACTGGTTCCGAGTTTGTTGAATCTGTTGAAACTGATGGTGACATTGGTGTCGTTCTTGAATCTACAAGTTTCTATGCTGAACAAGGTGGTCAGATTTTCGACACTGGATCACTGGAGGGTCCACATGCATCATTCAAAGTTCACAACGTACAAGTATTTGGAGGTTTTGTTCTCCACATTGGTTCTAATGGGAATGGAATCTCTGTTGGTGACAAAGTAGTATGCAAGGTTGATTATGGTAGGCGTTCCCTTATAGCCCCCAACCATACCTGCACACACATGTTAAACTTTGCTCTTAGGGAAGTACTTGGGGATCATGTTGACCAGAAAGGATCCATTGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATCCCGACAATTTGAGGAAAATCGAATCAATTGTTAATGAGCAAATTAGGGATGAATTAGATGTCAATGCAAAGGAGGCAACTCTTGCTGAAGCCAAGCGTATTAATGGCTTACGAGCTGTGTTTGGAGAAGTTTATCCTGATCCCGTAAGAGTTGTATCAATCGGAGAAAAAGTTGAGGATCTCCTTGCCGACCCTGAAAATAAAAAATGGTTATCTATTTCATCAGAATTATGTGGTGGCACCCATATATCAAACACAAGAGAGGCCAAAGCTTTTGCTCTTTTATCTGAGGAGGGAATTGCAAAGGGAATACGCAGAATAACAGCTGTGACAACTGATCGTGCTTCTGATGCAATAAGAGTTGCAGATGAATTTGAGCAGCACGTAGACAATGCAGCCAAGTTAGAGGGAAGTTCACTGGAAGAGAAAGTTTTGTACCTGAAAAGCAATGTGGAAACCTTATCTATTCCTGCAGCCAAGAAAGCTGACATAAAGAACAAGATAGTCCAACTTCAGGATCGGGTGAGAAAAGCACAAAAGCAAATTGCTGAAGAAAATAAACGTAAAGCTGTGACGATTACAGCTGAGAAGGCTGAACTTGCTGCATCAGATGGGAAAACATTTTGCGTGTCCCAGGTTGAAGTTGGTCTGGATGTAAACGCAGTACGTGAAGCAGTTACAAAAGTCATGGAGCAGAAGGGTATATCTGTTATGGTATTTAGCACTGACAAGTCTACAAACAAGGCTGTAGTTTGTGCTGGCGTGCCGGAGAAAGGTGATAAAGGCAAGCTGGATGTTACAGAGTGGCTAACCAACGCTTTAGGGCCTCTGAAAGGGAGATGCGGTAAAGGAAAAGGTGGTCTTGCAACAGGCCAGGGTACAGATGCATCACATGTAAGTGAGGCTATGGATCTTGCAACATCATTTGCATCAATGAAATTGACTTAA 3030 0.4376 MRRGLFGAASNRNCFTKPPLISSSIFTLLKPFCAVASSPARSLPTSVASAAAMPGSDSSNREWPAKRVRDTFFKFFEEKRHVYWRSSPVVPFNDPTLLFANAGMNQFKPIFLGTVDPNTALSKLTRMNQFKPIFLGTVDPKSFGDYFKEEAITWAWELLTKVYKLPSDRIYATYFGGDENAGLAPDNEARDIWLKFLPPGRVLPFGCKDNFWEMGETGPCGPCTEVHFDRIGNREASSLVNNDDPTLIEIWNLVFIQYNREADASLKPLPAKHVDTGLGFERLTSVLQNKMSNYDTDVFLPIFDAIQLETGARPYSGKVGPDDADKVDMAYRVVADHIRTLSFAIADGSRPGNDGREYVLRRILRRAVRYGREVLKAKEGFFNRLVSVVVKVMGDVFPELKQQEAHIRDVIEEEEESFGRTLIKGIEKFNNAVQHVQDKQLSGEATFVLWDTYGFPIDLTKVGYLLDIIESLSSSILYLLFLSISIFQLMAEEKGLTVDEDGYNKALEAARERSRNAQATQAGGAIIMDADATSMLHRRGIAPTDDSFKYVWFKDHESVVKAIYTGSEFVESVETDGDIGVVLESTSFYAEQGGQIFDTGSLEGPHASFKVHNVQVFGGFVLHIGSNGNGISVGDKVVCKVDYGRRSLIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVDPDNLRKIESIVNEQIRDELDVNAKEATLAEAKRINGLRAVFGEVYPDPVRVVSIGEKVEDLLADPENKKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRASDAIRVADEFEQHVDNAAKLEGSSLEEKVLYLKSNVETLSIPAAKKADIKNKIVQLQDRVRKAQKQIAEENKRKAVTITAEKAELAASDGKTFCVSQVEVGLDVNAVREAVTKVMEQKGISVMVFSTDKSTNKAVVCAGVPEKGDKGKLDVTEWLTNALGPLKGRCGKGKGGLATGQGTDASHVSEAMDLATSFASMKLT 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00979 1009 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 63 815 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Aip03g00979 1009 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 743 801 IPR012947 GO:0004812|GO:0005524|GO:0043039
Aip03g00979 1009 Gene3D - 894 1004 - -
Aip03g00979 1009 Hamap Alanine--tRNA ligase [alaS]. 63 1008 IPR023033 GO:0004813
Aip03g00979 1009 SUPERFAMILY Class II aaRS and biotin synthetases 65 294 IPR045864 -
Aip03g00979 1009 Pfam tRNA synthetases class II (A) 68 120 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Aip03g00979 1009 Pfam tRNA synthetases class II (A) 483 643 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Aip03g00979 1009 Pfam tRNA synthetases class II (A) 142 461 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Aip03g00979 1009 PANTHER ALANYL-TRNA SYNTHETASE 37 128 - -
Aip03g00979 1009 PANTHER ALANYL-TRNA SYNTHETASE 133 462 - -
Aip03g00979 1009 PANTHER ALANYL-TRNA SYNTHETASE 483 1008 - -
Aip03g00979 1009 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 295 523 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Aip03g00979 1009 PRINTS Alanyl-tRNA synthetase signature 356 369 IPR002318 GO:0000166|GO:0005737
Aip03g00979 1009 PRINTS Alanyl-tRNA synthetase signature 275 288 IPR002318 GO:0000166|GO:0005737
Aip03g00979 1009 PRINTS Alanyl-tRNA synthetase signature 332 348 IPR002318 GO:0000166|GO:0005737
Aip03g00979 1009 PRINTS Alanyl-tRNA synthetase signature 248 259 IPR002318 GO:0000166|GO:0005737
Aip03g00979 1009 Pfam DHHA1 domain 863 1002 IPR003156 GO:0003676
Aip03g00979 1009 CDD AlaRS_core 65 290 - -
Aip03g00979 1009 Gene3D Bira Bifunctional Protein; Domain 2 33 126 IPR045864 -
Aip03g00979 1009 PANTHER BNACNNG61840D PROTEIN 37 128 - -
Aip03g00979 1009 Coils Coil 855 882 - -
Aip03g00979 1009 Gene3D - 552 641 - -
Aip03g00979 1009 Gene3D Bira Bifunctional Protein; Domain 2 134 291 IPR045864 -
Aip03g00979 1009 SMART tRNA_SAD_4 743 802 IPR012947 GO:0004812|GO:0005524|GO:0043039
Aip03g00979 1009 SUPERFAMILY Translation proteins 568 641 IPR009000 -
Aip03g00979 1009 SUPERFAMILY ThrRS/AlaRS common domain 641 817 IPR018163 GO:0000166
Aip03g00979 1009 PANTHER BNACNNG61840D PROTEIN 483 1008 - -
Aip03g00979 1009 PANTHER BNACNNG61840D PROTEIN 133 462 - -
Aip03g00979 1009 Gene3D - 642 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00979 Aip-Chr3 9426688 9443730 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00979 K01872 - gmx:100788271 1551.95