Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00917 ATGCCATCGCCTCTCTCCTTCTCACCCCTCAACAAGCTCAAGCGCTTCAAATCCCTCAAGCTCTGCATTTCAAAGTCCCTCCTCAACGCTCCTTCCCTCTACGACGCCGTTTCATCTCTCGATCACTTCCACCCTAAGGGCATTCGCTTACCTTCTCGTGTTCTCGCCATCCTCTTGCGCCATTGCTCCGCCTCCAAATCCTACCGTGAGGGCAAATTGGTCCATTTGCATCTCAAGCTCACCGGTTTCAAACGCCCCACTACGTATTTGGCCAACCATTTGATCTGTATGTACTTTTGTTGCGGCGATTTTGTTAGTGCCCGCAAGGTGTTCGACAAAATGGAGGCTAGAAATTTGTACTCTTGGAACAATATGATTTCTGGGTATGTGAAATTGGGCATGATGAAGCAGGCTCGGCGTGTGTTTGATAGAATGCCTGAGAGGGATTTCGTGTCGTGGAATACGATGATTGTTGGGTATGCGCGTAATGGGGTGTTTGGTGAGGCTTTGAGGTTTTATGGGGAGTTGAGGAGATTGTGTATTGGGTATAATGGGTTTAGTTTTGCAAGTGTGTCGATTGTTTGTGTGAAGCTGAAGGACTTTGAGCTTTCTAGGCAGGTTCATGCGCAGGTTTTGGTTGTTGGATTTTTGACCAATGTAGTTGTATCCAGCTCGATTGTTGACGCTTATGCAAAGTGTGGGAAGATGAAGGAGGCGAGGAGATTGTTTGATGAGATGCCCGTGAGGGATATCCCTGCTTGGACAACACTAGTTTCGGGTTATGCAGCATGTGGGAACATGGAATCAGCTGCTGAAGTTTTTTGTGAGATGCCACAGAAGAATTCTTATTCATGGACATCGCTGATTGGAGGTTATGCTAGAAACGGTATGGGTCATGAAGCTCTTCGAGTGTTTAGAAAGATGATCCAGCATCGAGTTAGACCTGATAAGTATACATTTCATAGTTGTTTCTTGGCTTGTGCTATTATTGCTTCATTGAAACATGGTAAACAATTACATTCATATTTGGTGCAAAATAACATCAGACCTAATACTGTTGTTGTTAGTGCTATTATTGACATGTATTCAAAATGTGGAACTTTAGAAACTGCCAAGAAAGTGTTTAATATAAATGGAAATAAGCAAGATGTAGTATTGTGGAACTCAATGATATCGGCGCTGGCTTACTGTGGCTATGGTATAGAAGCAATTATGATGCTAAACGATATGCTAAGATCAGGAGTGAAGCCAGACAAGGCCACTTTTGTTTCAATTCTTAATGCTTGCAGTCACTCAGGTCTTGTGCAGGAAGGGCTTCAGTTTTTCATGTCCATGACTAGTGAGCATGGTGTTGTCCCAGACCAAGAACACTATGCATGCTTAGTTAATCTGTTGCATCGCGCTGGATGCTTTAATGAATCAGGGAATGATCTACAAGTGATGGATCACAAGCCAGGTGAGCATGTTGAGAATAGTTCGCATGATCTATCGAGAAAGCTTGAAAGTACAAAACTTGAAAGAGAAGTACATAAATTCCCTATTAGATTGCAGCTTCAATCCACTGCTGCTTACTTGTTACTTTCAAGTGTGTATGTTGCACTCGTGAAAAGGGGGTCTCTTGAGAAAATGAGACAGATTATGCATGAGCAATGTTTGAGGCTCAATCAAGCCGTCACTTGA 1680 0.4327 MPSPLSFSPLNKLKRFKSLKLCISKSLLNAPSLYDAVSSLDHFHPKGIRLPSRVLAILLRHCSASKSYREGKLVHLHLKLTGFKRPTTYLANHLICMYFCCGDFVSARKVFDKMEARNLYSWNNMISGYVKLGMMKQARRVFDRMPERDFVSWNTMIVGYARNGVFGEALRFYGELRRLCIGYNGFSFASVSIVCVKLKDFELSRQVHAQVLVVGFLTNVVVSSSIVDAYAKCGKMKEARRLFDEMPVRDIPAWTTLVSGYAACGNMESAAEVFCEMPQKNSYSWTSLIGGYARNGMGHEALRVFRKMIQHRVRPDKYTFHSCFLACAIIASLKHGKQLHSYLVQNNIRPNTVVVSAIIDMYSKCGTLETAKKVFNINGNKQDVVLWNSMISALAYCGYGIEAIMMLNDMLRSGVKPDKATFVSILNACSHSGLVQEGLQFFMSMTSEHGVVPDQEHYACLVNLLHRAGCFNESGNDLQVMDHKPGEHVENSSHDLSRKLESTKLEREVHKFPIRLQLQSTAAYLLLSSVYVALVKRGSLEKMRQIMHEQCLRLNQAVT 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00917 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Aip03g00917 559 TIGRFAM PPR: pentatricopeptide repeat domain 120 151 IPR002885 -
Aip03g00917 559 TIGRFAM PPR: pentatricopeptide repeat domain 283 316 IPR002885 -
Aip03g00917 559 TIGRFAM PPR: pentatricopeptide repeat domain 151 179 IPR002885 -
Aip03g00917 559 TIGRFAM PPR: pentatricopeptide repeat domain 421 454 IPR002885 -
Aip03g00917 559 TIGRFAM PPR: pentatricopeptide repeat domain 92 119 IPR002885 -
Aip03g00917 559 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Aip03g00917 559 TIGRFAM PPR: pentatricopeptide repeat domain 225 251 IPR002885 -
Aip03g00917 559 TIGRFAM PPR: pentatricopeptide repeat domain 253 279 IPR002885 -
Aip03g00917 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Aip03g00917 559 Gene3D Tetratricopeptide repeat domain 152 294 IPR011990 GO:0005515
Aip03g00917 559 Gene3D Tetratricopeptide repeat domain 295 557 IPR011990 GO:0005515
Aip03g00917 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Aip03g00917 559 Pfam PPR repeat 224 250 IPR002885 -
Aip03g00917 559 Pfam PPR repeat 151 179 IPR002885 -
Aip03g00917 559 Pfam PPR repeat 354 376 IPR002885 -
Aip03g00917 559 Pfam PPR repeat 120 149 IPR002885 -
Aip03g00917 559 Pfam PPR repeat 92 118 IPR002885 -
Aip03g00917 559 Gene3D Tetratricopeptide repeat domain 10 151 IPR011990 GO:0005515
Aip03g00917 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Aip03g00917 559 PANTHER - 128 277 - -
Aip03g00917 559 PANTHER - 31 138 - -
Aip03g00917 559 PANTHER - 255 554 - -
Aip03g00917 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 453 IPR002885 -
Aip03g00917 559 Pfam PPR repeat family 280 327 IPR002885 -
Aip03g00917 559 Pfam PPR repeat family 383 430 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00917 Aip-Chr3 8773838 8776070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00917 136 552 Glycoside Hydrolase AT3G49170 29.065 6.10e-65 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00917 - - lja:Lj3g3v3500060.1 714.531