Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00885 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCCTCCTCTGTTCCCACCACTCGTTCCAGCAAGCGCGCACGCCTCAGCCACAACAACGCAAACAGCAGCAACAACAACTCTTCCTCTTCTTCTTCCGCCGCAGCAGCAACCGCACCCGCCGCCACAAAAACAGTCACCACTCGTTCCCGCGCAGCGTCTCGTTCCACCGCCAAGGATCCCTTACCGCCTAAGAACCCTAATCCTCCTCTCCCTCCTCCGATGGACTCAACCAACGAATCATCAGGCTCGCGCAGAAATCGCGGGAAGAATTCCGCCGATAGAGACAATTCCGACAAGGGGAAAGAGAAGGAGCACGATGTCAGGGTCAGGGAAAGGGATGCCGAAAGAGGATTGGCATTGAACATGGAAACTGGAGGCGTTGGAGACGATGATGATGATAGCGAGGGCGGAGTTGGGATTCTGCATCAGAACTTGACATCAGCCAGCAGTGCCCTCCAGGGCCTTCTTCGGAAACTCGGCGCTGGTTTGGACGATCTGCTTCCATCATCGGCCATGGGTTCGTCTTCGGCCTCTCATCAGAGTGGTAGGCTGAAGAAAATCCTTTTCGGGTTGAGGGCAGATGGAGAAGAAGGTAGACAGGTGGAGGCATTGACGCAGCTGTGTGAGATGCTCTCGATTGGGACTGAGGAATCGCTCAGCACTTTCTCTGTTGATTCGTTTGTTCCTGTGCTTGTTGGGTTGCTGAATCATGAGAGTAACCCTGATATCATGCTTCTTGCTGCAAGGGCGCTTACACATCTCTGTGATGTGTTGCCTTCATCTTGTGCCGCGGTTGTGCATTATGGTGCTGTGTCAATATTCTGTGCGAGGTTGCTTACCATAGAGTATATGGACTTAGCTGAGCAGTCTCTTCAAGCACTAAAGAAGATATCTCAGGAGCACCCAACTGCTTGCCTTCGAGCTGGTGCACTTATGGCTGTGCTTTCTTATTTGGATTTCTTTTCTACAGGAGTTCAGCGGGTGGCATTGTCCACTGCTGCAAATATGTGCAAGAAGCTTCCTTCGGATGCAGCTGACTTTGTGATGGAAGCCGTTCCTCTTTTGACCAATCTCCTTCAGTACCATGATGCGAAGGTCCTGGAGCATGCCTCTGTATGTTTGACTCGAATAGCTGAAGCATTTGCATCATCTCCGGACAAATTAGATGAATTGTGTAATCATGGACTAGTAACACAAGCTGCTTCTCTGATTTCGACCAGCAGCTCTGGAGGTGGACAAGCTTCCCTCAGCACATCAACATATACTGGTTTAATTCGACTTCTTTCAACCTGCGCAAGTGGGTCACCTCTTGGGGCTAAAACTTTGCTTCTCCTGGGAATCAGTGGCATTCTTAAAGATATTCTGTCTGGGTCTGGAGTTTCTTCAAGTGTTTCCGTGTCTCCTGCCTTGAGTAGGCCGCCAGATCAGATATTTGAGATTGTGAACCTTGCAAATGAGCTTCTGCCCCCATTGCCACAAGGAACAATTTCCCTCCCTGTAAGTACCAGCATGTTTGTTAAAGGGCCTGTTATAAGAAAGCCTCCTACTGGAAGTTCTGGGAAACAAGAAGACACAAACGGAAATGCTCCCGAGATATCTGCTCGGGAGAAACTACTAAATGATCAGCCTGAGTTACTTCAGCAATTTGCAATGGATCTCCTCCCAGTTTTAGTACAGATTTATGGTTCTAGTGTTAATGGTCCTGTTCGGCATAAATGCCTTTCTGTAATTGGAAAACTGATGTATTTCAGTACAGCTGAGATGATCCAGTCTTTGTTGAGTGTGACAAATATATCAAGTTTCTTAGCCGGTGTCCTAGCCTGGAAAGATCCACATGTTCTAGTTCCTGCCTTGCAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTTTCTAAGATGTTTATCAGAGAAGGTGTTGTCCATGCAGTGGACCAACTTATTTTGGCTGGTAATTCAACAAGTGTCCCTGCACAAGCATCTTCTGCCGAGAAGGAGAATGATTCTGTATCTGGAGCATCATCTCGCTCTAGGCGTTATCGTCGCCGTAGTGGTAACAACAATCCTGATGGAAATCCCATGGATGATTCGAAGAGTCCAGTTTCTGGAAATGTTGGTTCACCTCCTGGTTCTGTGGATATTCCAGCAGTAAATTCTAGTATCCGGTTATCTGTCAGCACAGCTGCAAAAGCTTTTAAAGACAAGTACTTTCCTTCAGATCCTGGGGCTGCTGAAGTGGGTGTTACTGATGATCTGTTGTGTCTGAAAAATCTCTGCACAAAATTAAATGCTGGTGTTGATGATCAAAGGTCTACTGGAAAGGGGAAATCAAAAACTACAGGATTTGTTGTGGAAGAGATTTCTGCTAACAAGGAAGATTATTTGATTGGGGTTATCTCTGACATGCTAAAGGAACTTGGCAAAGGGGATGGTGTATCTACTTTTGAATTTATTGGCAGTGGAGTTGTTGCAGCTTTGCTCAATTATTTTTCTTGTGGAAATTTCTCCAAGGACCGAACCTCTGAAACCAACCTTCCCAAGCTTCGCCAGCTAGCACTTACAAGGTTCAAGTTGTTTATAGCTGTCGCACTTCCTCCTAGTACTCATGAGGGTTCTGTTGCTCCAATGACTGTCTTGGTCCAGAAGCTTCAAAATGCTTTGTCTTCCTTAGAGCGTTTCCCTGTGGTTCTTAGCCATTCATCTAGGTCTTCTAGTGGAAGTGCACGCCTCTCTTCTGGACTAAGTGCTTTGTCTCAACCCTTTAAGTTGCGTCTCTGTCGAGCCCAGGGTGAAAAGTCACTCAAGGACTATTCATCGAATGTTGTGCTGATTGATCCATTGGCATGTCTAGCAGCGATTGAGGAATTTCTTTGGCCCCGTATCCAGCGAAGTGAATCTGGTCAGAAGGTGTCCATACCAGCTGGGAACTCTGAATCTGGTACAACTCCTGCACAGGCTGGCGTTCCATCACCTTCTACGTCTACTCCTTCCACTACCCGCCGTCATTCTACCAGATCCAGATCATCCGTTAATATAGGTGATACGCCAAAAAAGGAGACAACTCCAGATAAAGGCACAAGCTCGTCTAAGGGCAAGGGAAAAGCTGTTTTAAAGCCAGCACAAGAAGAGGCAAGAGGACCTCAAACCAGGAATGCAGCACGCAGAAGAGCAGCTATTGATAAAGAAGAGCAAATGAAGCCGGCAAATGGCGACTCCACTTCCGAGGATGAGGAACTGGATATTTCCCCTGTTGAGATCGATGAGGCATTGGTGATTGAAGATGATGACATCTCTGATGACGAAGATGATGACCATGAAGATGTCTTGAGGGATGATTCTCTTCCTGTTTGCTTGCCTGACAAAGTACATGATGTGAAATTGGGTGACTCGGCTGAAGAGAGTAGTGCTGCTCCTGCTACAGGTGATGGCCAGACTAATGCTGCCTCAGGTTCTAGCAGCAAAGTTGGTACTGCCAGGGGATCAGATTCAGCTGATTTTAGGAGTAGCTATTCATCTGGTTCAAGAGGTGCAATGTCCTTTGCTGCTGCTGCCATGGCAGGACTTGGATCTGCTAATAACAGAGGTATCAGGGGTGGTAGGGATAGGCAAGGACGACCGCTGTTCAGTAGTTCTAATGAACCTCCGAAGTTGATCTTTACTGCTGGTGGGAAGCAGCTTAACAGGCATTTGACTATATATCAAGCAATTCAAAGACAACTGGTGCTAGATGAAGATGATGATGAGAGGTTTGGTGGCAGTGACTATGTGTCCAGCGATGGAAGCAGGCTATGGGGTGATATTTACACCATAACTTATCAGAGGGCAGATAGCCAAACGGATAGGGCTTCCACTGGTGGTTCAAGTTCTAATGTGTCAAAATCTGGCAAATCTGGTTCTGTGTCAAATTCTAGTACTGAACCAAAGCTTCATCAGGCATCCGTTCTCGATAGCATTTTGCAGGGAGAATTGCCTTGTGAGCTTGAGAAATCTAATCCTACATACAATATATTGGCGCTATTGCGTGTTTTGGAGGGTTTGAACCAGCTTGCACCTCGCTTGAGGGCCCAGGTCATTACTGAGAGTTTTGCTGAGGGGAAGCTTTCGAATTTAGATGAGTTAGGTGTTACCACTGGTGCAAGAGTTTCTTCAGAAGAATTCATAAGCAGCAAATTAACTCCAAAATTAGCTAGGCAGATACAAGATGCCCTTGCCCTGTGTAGTGGGAGTCTTCCCTCATGGTGTTACCAGTTAACTAAAGCATGCCCATTTTTGTTTCCTTTTGAGACCAGGCGACAGTACTTCTATTCAACTGCCTTTGGGTTATCCCGTGCCCTGTATCGACTTCAACAGCAGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGGTAAGGGTTGGGAGATTGCAGCGTCAAAAGGTTCGTGTCTCTCGAAACCGCATATTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTTGAATATTTTGGTGAAGTTGGTACTGGCCTTGGTCCCACACTTGAGTTTTATACACTTCTAAGTCATGACTTGCAAAAAGTTGGACTACAAATGTGGAGATCAGATTCCTCAGAGAAATATCAAATGGAAATTGATGGAGATGAAAAGAAAATGAAAAGCAGTGAAGGTTCTCTTGCTGGTGATGGAGAACTTGTTCAAGCTCCTCTTGGGTTGTTTCCACAGCCTTGGCCTTCAAATGCCGATGCAACAGAGGGTAGTCAGTTTTCTAAGGCGATCGAGTATTTCCGACTTTTGGGCCGTGTGGTTGCTAAAGCTCTCCAGGATGGACGTCTGTTGGATTTGCCCTTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGAAAAACTTTGCAAGAGTTGAATGCACTTGTCTGCCGGAAATATCATCTAGAATCTACTGGTGGTAGTTACACCGATGTGAATAGTAATTTACATTTCCGTGGGGCTCCGGTTGAAGACCTCTGCTTGGATTTTACTCTTCCCGGCTATCCTGAGTACATCTTGAAATCAGGAGATGAAATTGTTGACATTAATAATTTGGAGGAGTATATATCTTTGGTAGTTGATGCAACTGTCAAGACTGGGATCACACGTCAAATGGAAGCATTTAAAGCAGGATTCAACCAGGTTTTTGACATATCGTCTTTGCAAATTTTTACTCCTCAAGAACTGGACTACCTGCTTTGTGGTCGTAGGGAGATGTGGAAGGCTGATACACTAGTTGACCATATAAAGTTTGACCATGGATACACTGCCAAGAGCCCTGCCATAGTCAATTTACTTGAAATTATGGGAGAGTTTACACCAGAACAGCAACGCGCTTTCTGTCAATTTGTTACTGGTGCACCTAGGCTACCCCCTGGTGGACTGGCAGTTCTAAATCCGAAACTAACTATTGTGAGGAAGCTTTCGTCAACTGCAGCCAATGCTTCGTCTAATGGGAATGGGCCTTCGGAATCAGCAGATGATGACTTGCCAAGTGTGATGACATGTGCTAATTACTTGAAGCTTCCTCCCTATTCTACCAAGGAAATTATTTTGGGCTGGTCATCGAAAGTTGTGGCAAAGTTCAGCTGA 5724 0.4605 METRSRKRAEASSAAPSSSSSVPTTRSSKRARLSHNNANSSNNNSSSSSSAAAATAPAATKTVTTRSRAASRSTAKDPLPPKNPNPPLPPPMDSTNESSGSRRNRGKNSADRDNSDKGKEKEHDVRVRERDAERGLALNMETGGVGDDDDDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSSSASHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSSGGGQASLSTSTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSSVSVSPALSRPPDQIFEIVNLANELLPPLPQGTISLPVSTSMFVKGPVIRKPPTGSSGKQEDTNGNAPEISAREKLLNDQPELLQQFAMDLLPVLVQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFIREGVVHAVDQLILAGNSTSVPAQASSAEKENDSVSGASSRSRRYRRRSGNNNPDGNPMDDSKSPVSGNVGSPPGSVDIPAVNSSIRLSVSTAAKAFKDKYFPSDPGAAEVGVTDDLLCLKNLCTKLNAGVDDQRSTGKGKSKTTGFVVEEISANKEDYLIGVISDMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGNFSKDRTSETNLPKLRQLALTRFKLFIAVALPPSTHEGSVAPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLKDYSSNVVLIDPLACLAAIEEFLWPRIQRSESGQKVSIPAGNSESGTTPAQAGVPSPSTSTPSTTRRHSTRSRSSVNIGDTPKKETTPDKGTSSSKGKGKAVLKPAQEEARGPQTRNAARRRAAIDKEEQMKPANGDSTSEDEELDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPVCLPDKVHDVKLGDSAEESSAAPATGDGQTNAASGSSSKVGTARGSDSADFRSSYSSGSRGAMSFAAAAMAGLGSANNRGIRGGRDRQGRPLFSSSNEPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDDERFGGSDYVSSDGSRLWGDIYTITYQRADSQTDRASTGGSSSNVSKSGKSGSVSNSSTEPKLHQASVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLAPRLRAQVITESFAEGKLSNLDELGVTTGARVSSEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQMWRSDSSEKYQMEIDGDEKKMKSSEGSLAGDGELVQAPLGLFPQPWPSNADATEGSQFSKAIEYFRLLGRVVAKALQDGRLLDLPLSVAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKYHLESTGGSYTDVNSNLHFRGAPVEDLCLDFTLPGYPEYILKSGDEIVDINNLEEYISLVVDATVKTGITRQMEAFKAGFNQVFDISSLQIFTPQELDYLLCGRREMWKADTLVDHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAANASSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIILGWSSKVVAKFS 1907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00885 1907 SUPERFAMILY ARM repeat 202 670 IPR016024 -
Aip03g00885 1907 Gene3D - 209 680 IPR011989 -
Aip03g00885 1907 Gene3D Hect, E3 ligase catalytic domain 1784 1897 - -
Aip03g00885 1907 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 87 1895 - -
Aip03g00885 1907 Gene3D Hect, E3 ligase catalytic domains 1432 1675 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 1128 1149 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 1156 1189 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 79 93 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 677 693 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 984 1035 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 1067 1092 - -
Aip03g00885 1907 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 87 1895 IPR045322 GO:0006511|GO:0061630
Aip03g00885 1907 MobiDBLite consensus disorder prediction 677 732 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 984 1189 - -
Aip03g00885 1907 SMART arm_5 359 397 IPR000225 GO:0005515
Aip03g00885 1907 SMART arm_5 316 356 IPR000225 GO:0005515
Aip03g00885 1907 SMART arm_5 233 274 IPR000225 GO:0005515
Aip03g00885 1907 SMART hect_3 1503 1907 IPR000569 GO:0004842
Aip03g00885 1907 CDD HECTc 1492 1894 IPR000569 GO:0004842
Aip03g00885 1907 MobiDBLite consensus disorder prediction 1 134 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 10 72 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 1210 1234 - -
Aip03g00885 1907 Pfam HECT-domain (ubiquitin-transferase) 1540 1895 IPR000569 GO:0004842
Aip03g00885 1907 ProSiteProfiles HECT domain profile. 1613 1895 IPR000569 GO:0004842
Aip03g00885 1907 MobiDBLite consensus disorder prediction 1295 1327 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 705 725 - -
Aip03g00885 1907 MobiDBLite consensus disorder prediction 104 134 - -
Aip03g00885 1907 SUPERFAMILY Hect, E3 ligase catalytic domain 1484 1895 IPR035983 GO:0004842
Aip03g00885 1907 MobiDBLite consensus disorder prediction 1093 1127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00885 Aip-Chr3 8457780 8466421 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00885 K10590 - gmx:100783336 2958.7