Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00883 ATGAGTGCATCAAGGTTCATAAAGTGTGTCACTGTTGGTGATGGTGCTGACTTAGATTTTTCTTGCAATAATCTTGTGTTTCTTTGTATCCATTGGCAACAGGATTATGTTCCAACTGTCTTTGACAATTTCAGCGCAAATGTGGTTGTGGATGGGAGCACTGTGAATTTGGGTTTGTGGGACACTGCTGGCCAAGAAGATTACAATAGATTAAGACCTTTAAGCTATCGAGGAGCTGATGTATTCCTGCTAGCATTCTCTCTCATAAGCAGGGCTAGCTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATTATGCTCCTGGTGTTCCAATTATTCTTGTTGGAACAAAACTTGATCTTCGGGATGATAAGCAGTTTTTTCAAGATCATCCTGGTGCAGCGCCTATCACCACAGTGCAGGGTGAGGAACTGAGAAAACTTATCGGTGCTCCAGTTTACATCGAATGTAGTTCAAAAACACAGCAGAATGTGAAGGCTGTTTTTGATGCGGCCATCAAAGTAGTTCTCCAGCCTCCAAAGCAGAAGAAAAAGAAGAGAAAGGGTCAAAAAACCTGTTCCATATTGTGA 597 0.4188 MSASRFIKCVTVGDGADLDFSCNNLVFLCIHWQQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPGAAPITTVQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKGQKTCSIL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00883 198 SMART rab_sub_5 7 181 - -
Aip03g00883 198 Pfam Ras family 8 179 IPR001806 GO:0003924|GO:0005525
Aip03g00883 198 ProSiteProfiles small GTPase Ras family profile. 2 198 IPR001806 GO:0003924|GO:0005525
Aip03g00883 198 PRINTS Transforming protein P21 ras signature 110 123 - -
Aip03g00883 198 PRINTS Transforming protein P21 ras signature 156 178 - -
Aip03g00883 198 PRINTS Transforming protein P21 ras signature 31 47 - -
Aip03g00883 198 PRINTS Transforming protein P21 ras signature 48 70 - -
Aip03g00883 198 PANTHER RHO FAMILY GTPASE 1 198 IPR003578 GO:0005525|GO:0007264
Aip03g00883 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 179 IPR027417 -
Aip03g00883 198 TIGRFAM small_GTP: small GTP-binding protein domain 34 172 IPR005225 GO:0005525
Aip03g00883 198 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 198 - -
Aip03g00883 198 CDD Rop_like 6 179 - -
Aip03g00883 198 ProSiteProfiles small GTPase Rho family profile. 1 178 - -
Aip03g00883 198 Gene3D - 5 193 IPR027417 -
Aip03g00883 198 ProSiteProfiles small GTPase Rab1 family profile. 1 198 - -
Aip03g00883 198 SMART ras_sub_4 4 181 - -
Aip03g00883 198 SMART rho_sub_3 9 181 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00883 Aip-Chr3 8437979 8440178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00883 35 181 EF-hand Containing Proteins AT3G63150 31.757 1.55e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00883 K04392 - gmx:100785464 336.265