Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00882 ATGGCATCCAAGAGAATCCTGAAGGAGCTCAAGGACTTGCAGAGAGACCCTCCAACTTCATGCAGTGCAGGCCCTGTGGGTGAGGACATGTTCCATTGGCAAGCAACAATCATTGGCCCAAATGACAGTCCCTATGCTGGTGGTGTTTTCCTTGTCACTATCCATTTCCCTCCTGATTATCCCTTCAAACCTCCCAAGGTTGCATTCAGGACCAAGGTATTCCATCCCAACATAAACAGTAATGGCAATATTTGCCTAGATATACTGAAAGAACAATGGAGTCCTGCTCTTACCATATCCAAGGTAATGCATGAATGGATATATTTTTCTTCTTCTGTTTCATGA 345 0.4435 MASKRILKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVMHEWIYFSSSVS 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00882 114 SUPERFAMILY UBC-like 2 104 IPR016135 -
Aip03g00882 114 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Aip03g00882 114 Gene3D Ubiquitin Conjugating Enzyme 1 109 IPR016135 -
Aip03g00882 114 PANTHER BNAA01G32320D PROTEIN 3 103 - -
Aip03g00882 114 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 103 - -
Aip03g00882 114 CDD UBCc 3 104 IPR000608 -
Aip03g00882 114 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 114 IPR000608 -
Aip03g00882 114 Pfam Ubiquitin-conjugating enzyme 5 105 IPR000608 -
Aip03g00882 114 SMART ubc_7 4 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00882 Aip-Chr3 8434976 8436714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00882 2 109 Miscellaneous Gene Families AT3G17000 37.168 5.13e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00882 K06689 - gmx:100787053 219.55