Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00879 ATGGCGGAAGAAGAGTACGATGATGATGTCGAAGAAGAGTTCTCCGTTTGGAAGAGGAACACGCCGTTGTTGTACGATCTTGTCATTTCGCACCCTCTCCCATGGCCTTCTCTCACTGTTCACTGGCTCCATTCTTCTCCACAACCCCATTCTCATCCTTCCTTCAATCTCCACAAGATCCTTTACGCAACTCACACTTCAAATTCCGAACCGAACTACCTCATCCTCGCCAATGTTGCTCTTCCTGCCAACCCATCACAGCCTGTCGCTGCTGCTGTTGACGCTGAAAACCCGGTTCTGCCCAAGGTGGAGGTTACCCAAAGGATTATGGTTGATGGGGAGGTGAATAGGGCGAGGAGTATGCCCCAGAACCCTAGTGTTGTTGCTTCCAAGACTTGTGGTTCTGAGGTTTATGTGTTTGATGTTGAGAAGCAGCATGGAAAGGAACAAGGTAGTGGTTGTGATCCTGATTTGAGGTTGAGGGGTCATGACAAAGAAGGGTATGGTTTGTCTTGGAGCCCTTTTAAGAAAGGCTATCTTTTGAGTGGCTCCCATGACTCAAAGATTTGCGTGTGGGATGTGTTAGCTGCGGATCAAGATAATGTGCTTGATGCGATCCATGTTTTTGAGGCACATGATGGCGTGGTTGGGGATGTATCCTGGCATTCAAAGCACGAGAGTTTATTTGGCTCTGTTGGCGATGATTGCAAATTAATCATTTGGGACTTGAGGACAAATAAGGCCCAGCAATCAGTCAAGGCACATGAGAATGAGGTGAACTTTATTTCTTTCAATCCATATAATGAATGGATTGTAGCTACAGCATCTTCAGACACCACCATTGCCCTCTTTGATACAAGGAAACTGGCGGAGCCACTGCATGTTTTGAGTAGCCACACCGATGAGGTGTACCAGGTGGAGTGGGATCCTAATCATGAGACCGTGTTGGCATCTTCAGGTGCTGACAGAAGGCTGAACGTTTGGGACCTTAGCAGAGTCGGGGATGAGCAGAATGAAGGGGATGGTGATGGTGGCCCTCCTGAGCTACTCTTCTCTCATGGTGGTCACAAAGGGAAGATATCGGACTTTTCGTGGAACAAGAATCAACCATGGGTTATCTCAAGTGTGGCTGAGGACAATTCTTTCCATGTGTGGCAAATGGCTGAGAATATATACAATGAAGATGGTGATGACGAAGATATCTGGACAGCTGATGGTCAAAACTAA 1227 0.4727 MAEEEYDDDVEEEFSVWKRNTPLLYDLVISHPLPWPSLTVHWLHSSPQPHSHPSFNLHKILYATHTSNSEPNYLILANVALPANPSQPVAAAVDAENPVLPKVEVTQRIMVDGEVNRARSMPQNPSVVASKTCGSEVYVFDVEKQHGKEQGSGCDPDLRLRGHDKEGYGLSWSPFKKGYLLSGSHDSKICVWDVLAADQDNVLDAIHVFEAHDGVVGDVSWHSKHESLFGSVGDDCKLIIWDLRTNKAQQSVKAHENEVNFISFNPYNEWIVATASSDTTIALFDTRKLAEPLHVLSSHTDEVYQVEWDPNHETVLASSGADRRLNVWDLSRVGDEQNEGDGDGGPPELLFSHGGHKGKISDFSWNKNQPWVISSVAEDNSFHVWQMAENIYNEDGDDEDIWTADGQN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00879 408 PANTHER WD40 REPEAT FAMILY 3 400 - -
Aip03g00879 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 287 IPR001680 GO:0005515
Aip03g00879 408 Gene3D - 1 404 IPR015943 GO:0005515
Aip03g00879 408 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 3 400 - -
Aip03g00879 408 SMART WD40_4 202 242 IPR001680 GO:0005515
Aip03g00879 408 SMART WD40_4 245 285 IPR001680 GO:0005515
Aip03g00879 408 SMART WD40_4 289 329 IPR001680 GO:0005515
Aip03g00879 408 SMART WD40_4 346 386 IPR001680 GO:0005515
Aip03g00879 408 SMART WD40_4 153 193 IPR001680 GO:0005515
Aip03g00879 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 160 194 - -
Aip03g00879 408 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Aip03g00879 408 Pfam WD domain, G-beta repeat 206 242 IPR001680 GO:0005515
Aip03g00879 408 Pfam WD domain, G-beta repeat 291 329 IPR001680 GO:0005515
Aip03g00879 408 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Aip03g00879 408 PRINTS G protein beta WD-40 repeat signature 180 194 IPR020472 -
Aip03g00879 408 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Aip03g00879 408 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Aip03g00879 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 251 IPR001680 GO:0005515
Aip03g00879 408 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 12 82 IPR022052 -
Aip03g00879 408 SUPERFAMILY WD40 repeat-like 112 390 IPR036322 GO:0005515
Aip03g00879 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 331 IPR001680 GO:0005515
Aip03g00879 408 ProSitePatterns Trp-Asp (WD) repeats signature. 180 194 IPR019775 -
Aip03g00879 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 194 IPR001680 GO:0005515
Aip03g00879 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 331 - -
Aip03g00879 408 ProSitePatterns Trp-Asp (WD) repeats signature. 316 330 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00879 Aip-Chr3 8401977 8404531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00879 177 398 Miscellaneous Gene Families AT5G08390 25.225 2.50e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00879 K10752 - gmx:100791834 644.425