Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00873 ATGGAACTCAACCTCTGCGTGAACTACCATAACCGTCACGCTTTCAGATTCACTTCTCCTTCCGCCTTCTCTCTCTCCACTCTCCGTTCCGTCCGCACTCACTTCCTCGGTTCCGCCCACACTCTCCGTCCTCCACTACCGCCTCTTCAATCTCGCAAGAAATGCAACAGGTTGGGGCTTCTCCGCCTCCACTCACCGCGCTTCGTCTTCAAGGCTTCTTTGCAATCTCACTCTCTCATCGTCGTTGTCGTCCTCGTCACCTTATCCGCCGTTTCTATCCTCCGATTCACTCTCAATAACCGAAAGAAGTCTCGCAATCAGACACGTGGACATGCAAAATTTGCATTATCGCGACAAGGAAGTAATGTGGGGAACCAGGTCATTGAAAGCCAGATTCTCGGTTTTCCAGAATTTCAAAGGGATAACCCGTTGAGTGAAATTGGAAATTTAACAGATCACAATGCAGAAGATAACCATATTCTCGAGGACAAAGAGTCTCAGCTTCCGTTATTGAAATCTTCATTGGTTCACGAAGCATCCTTCATGACCAACATATCAGAGTCATCTACTCCTGTTCTTGACTCCAGTTTCAATAATAGTAGTTCGAGGGTTTTAGAAGAGTCTATTTTGCCAGATGCTTTCCAATCAACTGTGTTGCAACCTCTAGCTTTTGCTGAAGAAATGGCTTTACAAGTAGAAGAAAATCAAGATCAAGTTGACTCTGATCCTGAGTCACCTTTGACTATAGTTAAATCTGAGCATACCACTTCTTCTGTTGGTATAAACAATGAACTCACAACAATCGATGAACAAACTAAAGAAAACATTGATGCCATCAGCTTTGATGTCCTTTTCGGTGAATCAGCGAGGCAAGAGCTGTACATGTTTTATGAGGATAACAAGTCTACAGTTGGGTCCATGTCACCACTTAGTAGTCTAAAGTCGTTATCTCTTCATGCTTCAACTAATAATGTTAAAGGATTGCCCTCAACAATGAGAAATACCACACTAAAAGGATCAGATATCTCAACAGAAATTTCTCCACAAGGTGCAGAATATATTGAAGGAGTGGTACCAATTTCCAGTCACACAGAAGGCTACACTCCACAAAATGGAAGTAAACACTCGAGGAAAGGTGGCAGAGCTCTGCCTGCCAAAGTTTTTCCCAACAATGGCCACTCAATCAACATGCAATTTGATCAGAAAAGTGATCAAACAAGGGTGGAGGATGATCAGAAGAATGACCATTCAGATTATCTGAGCAGATATAATAAGCTGTTAAAAGCTGCGAGGTTACATGAAAGTTTAGAATTGCTTAAAGATATGGAAACAAAGGGTTTATTAGATATGACCAAGATTTATCATGCAAAGTTTTTTAACATCTGCAAGAGGAAAAGGGCAGTTAAAGAAGCTTTTGATTACATTAGGCTAATTCCAAATCCAACTTTGAGTACATTTAACATGCTTATGTCAGTGTGTACAAGCTCCCAAGATTCAGAAAGGGCTTTCGAAGTGTTGAAGCTACTGAAAGAGGCTCGACTAGAACCTGATTGCAAACTTTATACCACTCTGATTTCCACTTGTGCTAAGAGTGGAAAAGTTGATACAATGTTTGAAATGTTTCACAAGATGGTTAATTCTGGAGTGGAACCCAATGTTCATACCTATGGGGCACTCATTGATGGTTGTGCTAGAGCTGGGCAAATAGCAAAAGCATTTGGTGCTTATGGAATATTGAGGTCCAAGAATGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCATGTGCTCAGTCAGGAGCGGTGGATCGTGCTTTTGATGTTTTAGCAGAAATGGCAGCTGAAATACAACCCATTGACCCAGATCACATAACTATTGGTGCATTGATGAAGGCTTGTGCAAATGCTGGTCAGGTTGAACGGGCACTAGAAGTGTATAAGATGTTACAAAAATATAATTTAAAGGGAACTCCAGAAGTTTACACGATTGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCATGTAGTGTTTACAATGACATGACCCAGAAAGGGGTTCTCCCTGATGAGATGTTTCTGAGTGCACTGATAGATGTTGCTGGACATGCGAAAAAGCTGGATGCTGCCTTTGATGTCCTCAAAGAAGCTCGTAAAGGAGGAATACATATTGGAATGATGTCATATAGCTCGCTAATGGGTGCCTGTAGCAATGCAAGAAATTGGGAAAAGGCATTGGAGCTATATGAATATCTCAAGGCACATAAATTGGTGCGAACAGTTTCAACAGTTAATGCTTTGCTCACTGCGCTTTGTGATGGAAATCAATTTCAGAGGGCTTTGGAAGTTTTATCTGAAATGAAAGGATTGGGATTGTGCCCAAACAGTATCACATTCTCAGTACTGTTAACAGCAAGCGAGAAAAACGATGATATGGAAGCAGCTCAAATGCTTCTTTCTCAAGCCAAAATGGAGGGTGTTGCCCTTAATGTCAACATGTGTCGATGCATAATTGGAATGTGCCTGCAAAGATATGAGAGGGATTGCTTTGTTGGTGAACCTGTTTTATCTTTCAACTCAGGACGGGCCCAAGTCAATAATAAATGGACATCACTGGCTTTAGCAGTGTATCGTGAAACACTTGGAGCTGGTGAAAAACCTACAAGTGAAATACTGTCACGACTTCTGGGATGCTTACAACTCCCTTATGATGCATCTGTCAAGAATAGACTAGTTGACAACCTGGGAGTAAGCACTGAATCTTCAAGAAACTCAAACCTTCGCGCATTAGTAGATGGTTTTGGGGAATATGATGTTCGTGCTTTTTCAATACTAGAGGAAGCTGCTTCATATGGAGTTGTTTCATCAGTATCATTCAAAGTGAGTCCTATTGTTGTTGATGCTAAGGACATGCATACGTCTACTGCTGAGGTTTATCTCTTAACTGTTCTGAAAGGTCTCAAGCATCGACTGGCAGCAGGTGCAAGATTATCCAATATAATAATTTTACTGCCGGTAGAGAAAACAAAAGTTTCAACTCAAAAGGGGGAAAAGATGATCAACTTGGCTAACAGAGTTGGCCAGGCAGTTGCAGCTTTATTCAGGAGACTTAAGATTCCTTACCAGGGTCACGAATCGAGTGGGAAGCTTAGAATTAATGGTCTAGCTCTGAAGAAATGGTTTCAGCCGAAACTTGCATCATTCAGTGGGAAACCAGGTGACTGGAGCTCATCCCCATCAAGACTGGGCAAACGCATTAGCCATCAGCAGCGAAGGATTCGAACCGGCAATTTATCTTTGGACTAA 3318 0.418 MELNLCVNYHNRHAFRFTSPSAFSLSTLRSVRTHFLGSAHTLRPPLPPLQSRKKCNRLGLLRLHSPRFVFKASLQSHSLIVVVVLVTLSAVSILRFTLNNRKKSRNQTRGHAKFALSRQGSNVGNQVIESQILGFPEFQRDNPLSEIGNLTDHNAEDNHILEDKESQLPLLKSSLVHEASFMTNISESSTPVLDSSFNNSSSRVLEESILPDAFQSTVLQPLAFAEEMALQVEENQDQVDSDPESPLTIVKSEHTTSSVGINNELTTIDEQTKENIDAISFDVLFGESARQELYMFYEDNKSTVGSMSPLSSLKSLSLHASTNNVKGLPSTMRNTTLKGSDISTEISPQGAEYIEGVVPISSHTEGYTPQNGSKHSRKGGRALPAKVFPNNGHSINMQFDQKSDQTRVEDDQKNDHSDYLSRYNKLLKAARLHESLELLKDMETKGLLDMTKIYHAKFFNICKRKRAVKEAFDYIRLIPNPTLSTFNMLMSVCTSSQDSERAFEVLKLLKEARLEPDCKLYTTLISTCAKSGKVDTMFEMFHKMVNSGVEPNVHTYGALIDGCARAGQIAKAFGAYGILRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAEIQPIDPDHITIGALMKACANAGQVERALEVYKMLQKYNLKGTPEVYTIAINSCSQTGDWEFACSVYNDMTQKGVLPDEMFLSALIDVAGHAKKLDAAFDVLKEARKGGIHIGMMSYSSLMGACSNARNWEKALELYEYLKAHKLVRTVSTVNALLTALCDGNQFQRALEVLSEMKGLGLCPNSITFSVLLTASEKNDDMEAAQMLLSQAKMEGVALNVNMCRCIIGMCLQRYERDCFVGEPVLSFNSGRAQVNNKWTSLALAVYRETLGAGEKPTSEILSRLLGCLQLPYDASVKNRLVDNLGVSTESSRNSNLRALVDGFGEYDVRAFSILEEAASYGVVSSVSFKVSPIVVDAKDMHTSTAEVYLLTVLKGLKHRLAAGARLSNIIILLPVEKTKVSTQKGEKMINLANRVGQAVAALFRRLKIPYQGHESSGKLRINGLALKKWFQPKLASFSGKPGDWSSSPSRLGKRISHQQRRIRTGNLSLD 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00873 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 764 798 IPR002885 -
Aip03g00873 1105 Coils Coil 809 829 - -
Aip03g00873 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 659 693 IPR002885 -
Aip03g00873 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Aip03g00873 1105 Gene3D Tetratricopeptide repeat domain 619 689 IPR011990 GO:0005515
Aip03g00873 1105 Gene3D Tetratricopeptide repeat domain 456 618 IPR011990 GO:0005515
Aip03g00873 1105 Pfam Pentacotripeptide-repeat region of PRORP 632 806 IPR033443 -
Aip03g00873 1105 Pfam Pentacotripeptide-repeat region of PRORP 485 623 IPR033443 -
Aip03g00873 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Aip03g00873 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 617 IPR002885 -
Aip03g00873 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
Aip03g00873 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Aip03g00873 1105 TIGRFAM PPR: pentatricopeptide repeat domain 485 518 IPR002885 -
Aip03g00873 1105 TIGRFAM PPR: pentatricopeptide repeat domain 520 553 IPR002885 -
Aip03g00873 1105 TIGRFAM PPR: pentatricopeptide repeat domain 554 587 IPR002885 -
Aip03g00873 1105 TIGRFAM PPR: pentatricopeptide repeat domain 767 799 IPR002885 -
Aip03g00873 1105 TIGRFAM PPR: pentatricopeptide repeat domain 662 695 IPR002885 -
Aip03g00873 1105 TIGRFAM PPR: pentatricopeptide repeat domain 732 763 IPR002885 -
Aip03g00873 1105 TIGRFAM PPR: pentatricopeptide repeat domain 627 657 IPR002885 -
Aip03g00873 1105 MobiDBLite consensus disorder prediction 1072 1093 - -
Aip03g00873 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 729 763 IPR002885 -
Aip03g00873 1105 Gene3D Tetratricopeptide repeat domain 705 932 IPR011990 GO:0005515
Aip03g00873 1105 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 72 1105 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00873 430 848 Glycosyltransferase AT1G05670 24.766 4.47e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00873 - - gmx:100814164 1535.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00873 03 8354217 8362159 Aip03g00873 03 8354217 8362159 ECH