Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00820 ATGGGGTTTAGAAAATCAAACAAGATTTCACAAAGTGCGGTCTTGAAGCAAATATTGAAGAGGTGTTCGAGCTTAGGGAAGAAGAATAGTAACAACAATGGATATGAAAATAATAACAACGATCCTTTTCCTCTTGATGTTCCAAAAGGGCACTTTGCTGTTTATGTTGGTGAGAATAGAAGAAGGTACATTGTTCCGATTTCGTTGTTGGGTAATCCTGAATTTCAATGCCTTCTTCGTCAAGCCGAAGAAGAATTCGGGTTTGAACATGACATGGGTCTCACTATTCCCTGTGAAGAAGTTGTTTTTCTCCGCTCCTTAACTACTTCAAGTTGA 336 0.3869 MGFRKSNKISQSAVLKQILKRCSSLGKKNSNNNGYENNNNDPFPLDVPKGHFAVYVGENRRRYIVPISLLGNPEFQCLLRQAEEEFGFEHDMGLTIPCEEVVFLRSLTTSS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00820 111 Pfam Auxin responsive protein 20 107 IPR003676 GO:0009733
Aip03g00820 111 PANTHER SMALL AUXIN-UP RNA-RELATED 7 109 - -
Aip03g00820 111 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00820 Aip-Chr3 8022097 8023117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00820 5 103 Calmodulin-binding Proteins AT4G34750 45.455 3.29e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00820 K14488 - rcu:107260773 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00820 03 8022097 8023117 Aip03g00820 03 8022097 8023117 ECH
Aip03g00820 03 8022097 8023117 Aip05g00904 05 12483877 12484557 ECH
Aip03g00820 03 8022097 8023117 Aip07g02440 07 102646444 102648944 ECH