Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00798 ATGGGGAGTTTAGGAGCGATTATGAAGCATCCAGATGATTTGTATCCGTTGCTGAAGCTGAAAATGGCGGCGAAGAAGGCCGAGAAGCAGATCCCGCCGGAGCCGCACTGGAGATTCTGCTACACCATGCTCCACAAGGTTTCTAGAAGCTTCGCACTCGTCATTCAGCAGCTCGGTACCGACCTTCGCAACGCCGTTTGCATATTTTATTTGGTTCTTCGAGCGTTGGATACCGTTGAGGATGATACCAGCATAGATACAGATGTCAAAGTGCCAATACTAATAGCTTTTCATAATCACATATATGATCGTGATTGGCACTTTTCATGTGGCACAAACAACTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGGGCTACCAAGAAGCAATTGAGGATATTACGAAAAGGATGGGTGCAGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAATTGATGACTATGATGAATATTGTCACTACGTGGCAGGACTTGTTGGGTTAGGTTTATCAAAGCTTTTCCATGCCTCTGGTTCAGAAGATCTTGCTCCAGATGACCTCTCCAATTCAATGGGCTTGTTTCTGCAGAAAGCAAACATTATGCGAGATTATTTGGAAGACATCAATGAGATCCCCAAGTCACGAATGTTTTGGCCTCGGCAGATCTGGAGTAAATATGTTAACAAACTTGAGGAGCTGAAATATCCGGAGAATTCCATCAAGGCAGTGCAATGCTTAAATGACATGGTCACTAACGCTCTGATGCATGCCGAAGATTCTTTAAAGTACATGTCTGCATTAAGAGACCTGGCTATATTTCGCTTTTGTGCTATTCCCCAGATAATGGCAATTGGGACAATTGCATTGTGCTATAACAACATCGAAGTCTTCAGAGGTGTAGTAAAAATGAGGCGTGGTTTAACTGCCAAAGTGATTGACCGAACAAAGACAATGGCTGATGTTTATGGTGCATTCTTTGATTTTGCTTGTATATTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCTACAAAAACATTGAGCAGGCTGCAATCTATACAGAAGACTTGCAGAGAATCTGGTCTCCTAAGTAAAAGGAAATCTTACATTGTGAATGGGAACGGATATAGCTCCACCATGATCTTCATCCTGATCATCACGTTTTCCATCCTTTTTGCATATCTCTCTGCTAACCGCCAAAACATTTAG 1239 0.4221 MGSLGAIMKHPDDLYPLLKLKMAAKKAEKQIPPEPHWRFCYTMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIDTDVKVPILIAFHNHIYDRDWHFSCGTNNYKVLMDQFHHVSTAFLELGKGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGSEDLAPDDLSNSMGLFLQKANIMRDYLEDINEIPKSRMFWPRQIWSKYVNKLEELKYPENSIKAVQCLNDMVTNALMHAEDSLKYMSALRDLAIFRFCAIPQIMAIGTIALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFACILESKVDKNDPNATKTLSRLQSIQKTCRESGLLSKRKSYIVNGNGYSSTMIFILIITFSILFAYLSANRQNI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00798 412 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 36 367 IPR006449 GO:0004310|GO:0008610
Aip03g00798 412 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Aip03g00798 412 Gene3D Farnesyl Diphosphate Synthase 34 371 IPR008949 -
Aip03g00798 412 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Aip03g00798 412 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Aip03g00798 412 SFLD Isoprenoid Synthase Type I 36 325 - -
Aip03g00798 412 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 409 IPR044844 GO:0004311
Aip03g00798 412 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Aip03g00798 412 PANTHER SQUALENE SYNTHASE-LIKE ISOFORM X1 1 409 - -
Aip03g00798 412 SUPERFAMILY Terpenoid synthases 36 367 IPR008949 -
Aip03g00798 412 SFLD Squalene/Phytoene Synthase Like 36 325 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00798 Aip-Chr3 7713674 7719891 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00798 K00801 - gmx:547940 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00798 03 7713674 7719891 Aip03g00798 03 7713674 7719891 ECH