Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00782 ATGATATCAATGGAAATCATTGATACCTTGCAGAGAGGGTTGAGCAAGGAACAAGTTTGGAGTGATGTTGGTTATGTCACAGGGTTTGAAGGGGATACTGAGGAGACTTTGAAATCGTTGAGTAATTCTAGTGCTGATGGTAAGGCAGAAAGTGGTTGGCACAAGGAAGATGAAATCCTTGATGACAGTTGGGTTCAGCAAAGTAGAAAGAAAGGGCCAGCTACCTCGCATCTCGATGGATTGAATTGGGAGGTGCTTGTTGTCAATGATTCGGTTGTCAATGCCATTTTGCTACCTGGTGGTAAGATTGTTGTATACAACGGATTGTTAGAGCATTTTAAAAGTGACGCTGAGATTGCCACTATAATTGGACATGAGGTTGGGCATGCTGTGGCCAGACACATCGCTGAAGGTGCGACGCATCCCCACAGTAATCTAACATTCTTAACTCTTAACCTTCACGTTACCGTCACAAGCTTCGTATACTTTCTCTTCTCTCTCTTCGCTCTCCTCTTTTTGTTTCTCTCTCCGATATCGTCGGAGGAGGACGGTGGTGCTGACGACGCCTTAATCCGCCAGGTGGTTGGTGACGGCGACGGCGACGGCGACGCGCATTTGTTGGGAGCGGAGCATCACTTCGCCGCCTTCAAGCGGAGATTCGGGAAGGTGTATTCTACGCTGGAGGAGCACGATTACAGGTTCGCGGTGTTCAAGGCTAACATGCACCGCGCGAGAAGACACCAGAGGATGGACCCCTCGGCGGTTCACGGCGTCACGCGGTTCTCTGACATGACGGAATCTGAGTTCAGGAAGAACGTTTTGGGGCTGAGAGGGGTTAGGTTGCCATCTGATGCAAACAAAGCTCCTATTCTGCCAACAGCAGATCTTCCCTCCGATTTTGATTGGAGAGATCATGGAGCTGTTACCCCTGTCAAAAATCAGGGTTCTTGTGGATCGTGTTGGAGTTTCAGCGCAACTGGGGCACTGGAAGGTGCTCATTATCTAGCTACCGGGGAACTTGTTAGTCTCAGTGAACAGCAGCTAGTTGATTGCGATCATGAGTGCGACCCAGATCAACCAGGTTCTTGTGACAAAGGGTGCAATGGTGGATTGATGAACAGCGCTTTTGAATACATCCTTAAATCCGGTGGGATCATGAGAGAGGAAGACTATCCTTATAAGGGTAGTGATCGTGGAACCTGCAAATTCAACAAGACAAAGATAGCAGCATCAGTAGCAAACTTCAGTGTAGTTTCACTTGATGAAGACCAGATTGCTGCCAATCTTGTTAAAAATGGCCCTCTTGCAGTGGCTATAAATGCTGTATTTATGCAGACATATATTGGAGGGGTTTCATGCCCATACATATGTTCAAAGAGGTTGGATCATGGGGTGTTACTGGTGGGATATGGCTCTGGAGGCTATTCTCTGATTCGGATGAAGGAGAAACCATATTGGATCATCAAGAATTCATGGGGAGAAAATTGGGGAGAAAATGGATACTACAAGATTTGCCGTGGACGGAATATCTGTGGGGTGGACTCCTTGGTTTCAACTGTGGCAGCTGTTCATACCACTGCTCATTAG 1587 0.4745 MISMEIIDTLQRGLSKEQVWSDVGYVTGFEGDTEETLKSLSNSSADGKAESGWHKEDEILDDSWVQQSRKKGPATSHLDGLNWEVLVVNDSVVNAILLPGGKIVVYNGLLEHFKSDAEIATIIGHEVGHAVARHIAEGATHPHSNLTFLTLNLHVTVTSFVYFLFSLFALLFLFLSPISSEEDGGADDALIRQVVGDGDGDGDAHLLGAEHHFAAFKRRFGKVYSTLEEHDYRFAVFKANMHRARRHQRMDPSAVHGVTRFSDMTESEFRKNVLGLRGVRLPSDANKAPILPTADLPSDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGAHYLATGELVSLSEQQLVDCDHECDPDQPGSCDKGCNGGLMNSAFEYILKSGGIMREEDYPYKGSDRGTCKFNKTKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVFMQTYIGGVSCPYICSKRLDHGVLLVGYGSGGYSLIRMKEKPYWIIKNSWGENWGENGYYKICRGRNICGVDSLVSTVAAVHTTAH 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00782 528 Gene3D Metalloproteases ("zincins"), catalytic domain 61 138 - -
Aip03g00782 528 SMART pept_c1 296 521 IPR000668 GO:0006508|GO:0008234
Aip03g00782 528 Pfam Papain family cysteine protease 296 519 IPR000668 GO:0006508|GO:0008234
Aip03g00782 528 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 314 325 IPR000169 -
Aip03g00782 528 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 485 504 IPR025661 -
Aip03g00782 528 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 186 522 - -
Aip03g00782 528 CDD Peptidase_C1A 297 520 IPR039417 -
Aip03g00782 528 PANTHER CYSTEINE PROTEASE RD19C-RELATED 186 522 - -
Aip03g00782 528 SMART Inhibitor_I29_2 213 269 IPR013201 -
Aip03g00782 528 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 461 471 IPR025660 -
Aip03g00782 528 Pfam Cathepsin propeptide inhibitor domain (I29) 213 269 IPR013201 -
Aip03g00782 528 Pfam Peptidase family M48 66 177 IPR001915 GO:0004222|GO:0006508
Aip03g00782 528 Gene3D Cysteine proteinases 201 521 - -
Aip03g00782 528 SUPERFAMILY Cysteine proteinases 211 520 IPR038765 -
Aip03g00782 528 PRINTS Papain cysteine protease (C1) family signature 463 473 IPR000668 GO:0006508|GO:0008234
Aip03g00782 528 PRINTS Papain cysteine protease (C1) family signature 485 491 IPR000668 GO:0006508|GO:0008234
Aip03g00782 528 PRINTS Papain cysteine protease (C1) family signature 314 329 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00782 Aip-Chr3 7586326 7589162 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00782 K01373 - gmx:100812198 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00782 03 7586326 7589162 Aip03g00782 03 7586326 7589162 ECH