LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g00756	ATGGAATCTGCATGTATGGCAATGAAAACCAATCCTCATTGCCTTCATCAAGAAAATGGATTCTTAGGTGAAAGGATCAAAGGGGGTGTCAACTACAGTCCCTGGATCATCAAAGAGAAGAAGAAGAAGATGATCAATAAGGCCAAACCTTCTGTTGTATCTTCTGTTCTTACATCAGAAACTGCAAAAGAATCTTTGACAATTCAAATGCCATCTTTTCTGAGAAGAAAAGCTGATCCAAAAAATGTAGTCTCAATCATATTGGGGGGTGGTCCTGGTGCTCAACTTTATCCACTCACAAAAAGAACAGCCACACCTGCTGTTCCTGTTGGTGGTTGCTACAGGCTTATAGACATACCAATGAGCAATTGCATCAACAGTGGCATCAACAAGATATTTGTGTTAACACAGTTCAACTCTGCATCCCTCAACCGGCACATAGCTCGCACCTACTTTGGAAATGGCATCAACTTTGGAGATGGATATGTTGAGGTTCTGGCAGCTACTCAAACAGCTGGTGAAGCTGGAAATAAGTGGTTCCAAGGAACAGCAGATGCTGTGAGGCAATTCACTTGGGTGTTCGAGGATGCTAAGCACACAAATGTTGAGAATGTTTTGATCTTGGCTGGTGATCATTTATACAGAATGGATTACATGGACCTTGTGCAGAGTCATGTAGATAGAAATGCAGATATCACAGTTTCATGTGCTGCTGTAGGAGACAGCCGCGCATCGGATTACGGGTTGGTCAAGGTTGATGGCAGAGGTAGGATCATCCATTTTTCAGAGAAACCAAAGGGTGCTGATCTGAAATCAATGCAAGTAGATACTTCTATTATGGGGTTGTCACACCAAGATGCAAAGAAATCACCATATATTGCCTCTATGGGGGTTTATGTATTCAAGACAGAGGTTTTACTCAAGCTTCTCAAATGGAGATATCCAACATCCAATGACTTTGGATCCGAAATCATTCCTGCAGCTGTCGGGGAGCACGATGTTCAAGCATATTTTTTTGGAGACTATTGGGAAGACATTGGAACAATCAAATCCTTTTATGATGCTAACATGGCTCTTACTGAAGAGAATCCAATGTTCAAATTCTATGACCCCAAGACACCTATTTACACATCTCCAAGATTCCTACCACCAACTAAGATTGATAAATGCCGGATTGTGGATGCAATCATCTCCCATGGATGTTTCCTGAGAGAATGTACTGTCCAACATTCCATTGTGGGCGAGCGATCGCGTTTGGATTATGGAGTTGAACTCCTGGACACTGTAATGATGGGAGCAGACTATTACCAAACGGAATCTGAAATAGCCGCGCTTTTGGCCGAAGGGAAGGTTCCCATTGGGATTGGAAAGAACACCAAGATTAGGAACTGCATAATTGACAAGAATGCAAGGATTGGGAAAGATGTGATCATCATGAACAAAGATGTGAGCATGTCTACCTCTTTTCTTTTTACATACATATTATTATCTCTTACCATACACAAAAgtctcactgtagacacgatacataataggagtcaatag	1545	0.4071	MESACMAMKTNPHCLHQENGFLGERIKGGVNYSPWIIKEKKKKMINKAKPSVVSSVLTSETAKESLTIQMPSFLRRKADPKNVVSIILGGGPGAQLYPLTKRTATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGYVEVLAATQTAGEAGNKWFQGTADAVRQFTWVFEDAKHTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDYGLVKVDGRGRIIHFSEKPKGADLKSMQVDTSIMGLSHQDAKKSPYIASMGVYVFKTEVLLKLLKWRYPTSNDFGSEIIPAAVGEHDVQAYFFGDYWEDIGTIKSFYDANMALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELLDTVMMGADYYQTESEIAALLAEGKVPIGIGKNTKIRNCIIDKNARIGKDVIIMNKDVSMSTSFLFTYILLSLTIHKSLTVDTIHNRSQ	514

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g00756	514	Gene3D	Hexapeptide repeat proteins	381	494	-	-
	Aip03g00756	514	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	81	476	IPR029044	-
	Aip03g00756	514	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	294	304	IPR005836	GO:0005978\|GO:0008878
	Aip03g00756	514	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	83	479	IPR011831	GO:0005978\|GO:0008878
	Aip03g00756	514	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	179	187	IPR005836	GO:0005978\|GO:0008878
	Aip03g00756	514	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE	1	483	-	-
	Aip03g00756	514	SUPERFAMILY	Trimeric LpxA-like enzymes	377	486	IPR011004	-
	Aip03g00756	514	Pfam	Nucleotidyl transferase	85	361	IPR005835	GO:0009058\|GO:0016779
	Aip03g00756	514	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	1	483	IPR011831	GO:0005978\|GO:0008878
	Aip03g00756	514	CDD	LbH_G1P_AT_C	383	492	-	-
	Aip03g00756	514	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	89	108	IPR005836	GO:0005978\|GO:0008878
	Aip03g00756	514	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	69	380	IPR029044	-
	Aip03g00756	514	CDD	ADP_Glucose_PP	86	346	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g00756	Aip-Chr3	7257142	7261007	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g00756	K00975		-	gmx:100808791	851.662

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g00756	03	7257142	7261007	Aip03g00756	03	7257142	7261007	ECH