Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00693 ATGAGGCATTTGAGAGTGAGAGATGCTCTGGTGTACCATGATCATGTCCTTGCTATAAAATCTGGTCTGGACTCAAGCATTTTTACTTGTAATCAACTCATTCACAGCTACTCGAACCATGGCTTTGTTCAAGAGGCACACAAAGTGTTCGATGGAATGCATCAACGAAATGAATTCTCTTGGAATGCCATTATTATGGCCTACATAAAAGCACACAATTTGACTCGAGCACGATCACTTTTCGACTCTGCCTCCCACAAGGACTTGGTTGCTTACAATTCCATGTTGTCGGCTTATGTCGGCGCTGATGGTTATGAAACCGAGGCACTTGATTTCTTTGCTGCAATGCAATCTGCGCGCGTCACGGTTGGGATTGATGAGATCACTTTGACAACCATGCTTAACTTGACTGCCAAGCTAGGCATGGCGTACCATGGGAAGCAAATACATTCATACATGGTGAAAACTGCAAATGATTCAAGCAAGTTTGCAACAAGCTCTCTTATTGACATGTACTCTAAATGTGGTTCTTTTCACGAAGCATGCAACGTGTTTACTGGTTGTGATGGGATGGTGGATTTGGTTTCAAAGAATGCAATGATTGCAGCTTGTTGTAGGGAACGAGAGATGGACATGGCTTTGAATCTGTTTTGGAAAAATCATGAATTAAATAACATTGTATCCTGGAATACATTGCTTGTAGGACATGCCCAGAATGGCTATATGGAGAAGGCACTTGCCTTGTTTGCCGAGATGATTGAAAATGGTATCGGCTGCGATGAACACACTTTGGCTAGTGTTTTGAGTACCTGCTCTGGTTTAAAGTGCTTGAAATTAGGCAAGTGTGTTCATGCTTGGGTGTTGAGAAATGGTTGCATTTCAAATCAATTTATTAGCAGTGGCATTGTTGATCTCTACTGTAGGTGTGGGAATATTAGATATGCGGAGTTAGTCTATGCAGGAATCGGGATTGAGAATCCATTTGCAGTTGCTTCATTGATTACATGCTACTCATCTCAAGGTAACATGATAGAAGCTCAAAGGCTCTTCAATTCACTTACAGAAAGAAATTATGTTGCCTGGACAGCTTTATTTTCAGGTTATGTCAAATCACAACAATGTGAGGCAGTCTTCAAACTCTTCAGAGAGTATATATCTACAAAAGCTCTAGTTCCTCAAGCGATGATCATTATTCGTGTGCTTGGCGCATGTACAATGCAAGCAGCCCTTAGTTTGGGAAGGCAGATTCATGCTTACATCTTGAGAATGAGATTCCTTATGGATGAGAAATTGCTGGGTGCTTTGGTTGATATGTACTCAAAATGTGGGAATATTATGCATGCTGAGAAAATCTTTAGACTAGTTAACAATAGCAACAGAGATGCAATCTTGTATAATATTATGATAGCTGGTTATGCTCACCATGGGCTTGAAAATGAAGCTATTCAGCTTTTTGAGGAGATGTCGAAGAAAAGTGTCAAGCCTGATGCAATTACTTTTGTTGCACTCCTTTCGGCTTGTCGGCATCGTGGATTAGTAGAACTAGGAGAAAAGATTTTCATTTCCATGGAAGAAGAGTACAATGTAGTGCCTGATAATTACCACTATGCATGTATTGTTGATATGTATGGAAGGGCTAATCAACTAGAAAAGGCAGTCGAATTTATCAGGAAGATCCCTATACCGATAGATGCTACAATCTGGGGTGCATTTCTTAATGTTTGTCAAATCAGCAACAATACAGACCTTGTCAAACAGGCAGAAGAGAAACTGTTAAAGATTGATGTCGATAATGGGTCTCGGTATGTGCAATTGGCCAATCTTTATGCTGCCAAAGGGAAATGGGATGAGAAGGGAAGAATAAGAGAGAAAATGAGAGAAAAAGAGGCTAAGAAGGTTGCTGGTTGCAGTTGGATATATGTGGCAGATGGTATTCATGTATTCACTTCTGGTGATGCATCTCATACAAAAGGAGATGCAACATATGCAACTTGA 1995 0.4045 MRHLRVRDALVYHDHVLAIKSGLDSSIFTCNQLIHSYSNHGFVQEAHKVFDGMHQRNEFSWNAIIMAYIKAHNLTRARSLFDSASHKDLVAYNSMLSAYVGADGYETEALDFFAAMQSARVTVGIDEITLTTMLNLTAKLGMAYHGKQIHSYMVKTANDSSKFATSSLIDMYSKCGSFHEACNVFTGCDGMVDLVSKNAMIAACCREREMDMALNLFWKNHELNNIVSWNTLLVGHAQNGYMEKALALFAEMIENGIGCDEHTLASVLSTCSGLKCLKLGKCVHAWVLRNGCISNQFISSGIVDLYCRCGNIRYAELVYAGIGIENPFAVASLITCYSSQGNMIEAQRLFNSLTERNYVAWTALFSGYVKSQQCEAVFKLFREYISTKALVPQAMIIIRVLGACTMQAALSLGRQIHAYILRMRFLMDEKLLGALVDMYSKCGNIMHAEKIFRLVNNSNRDAILYNIMIAGYAHHGLENEAIQLFEEMSKKSVKPDAITFVALLSACRHRGLVELGEKIFISMEEEYNVVPDNYHYACIVDMYGRANQLEKAVEFIRKIPIPIDATIWGAFLNVCQISNNTDLVKQAEEKLLKIDVDNGSRYVQLANLYAAKGKWDEKGRIREKMREKEAKKVAGCSWIYVADGIHVFTSGDASHTKGDATYAT 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00693 664 Pfam PPR repeat 59 82 IPR002885 -
Aip03g00693 664 Pfam PPR repeat 332 357 IPR002885 -
Aip03g00693 664 Pfam PPR repeat 434 453 IPR002885 -
Aip03g00693 664 Pfam PPR repeat 166 185 IPR002885 -
Aip03g00693 664 Pfam PPR repeat 359 383 IPR002885 -
Aip03g00693 664 Pfam PPR repeat 28 57 IPR002885 -
Aip03g00693 664 Pfam PPR repeat 196 217 IPR002885 -
Aip03g00693 664 TIGRFAM PPR: pentatricopeptide repeat domain 28 57 IPR002885 -
Aip03g00693 664 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Aip03g00693 664 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Aip03g00693 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
Aip03g00693 664 PANTHER - 193 322 - -
Aip03g00693 664 PANTHER - 326 641 - -
Aip03g00693 664 PANTHER - 15 71 - -
Aip03g00693 664 PANTHER - 62 219 - -
Aip03g00693 664 Pfam PPR repeat family 461 507 IPR002885 -
Aip03g00693 664 Pfam PPR repeat family 225 271 IPR002885 -
Aip03g00693 664 Gene3D Tetratricopeptide repeat domain 277 407 IPR011990 GO:0005515
Aip03g00693 664 Gene3D Tetratricopeptide repeat domain 142 276 IPR011990 GO:0005515
Aip03g00693 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 123 IPR002885 -
Aip03g00693 664 Pfam E motif 579 639 IPR046848 -
Aip03g00693 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Aip03g00693 664 Gene3D Tetratricopeptide repeat domain 1 123 IPR011990 GO:0005515
Aip03g00693 664 Gene3D Tetratricopeptide repeat domain 479 656 IPR011990 GO:0005515
Aip03g00693 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00693 Aip-Chr3 6707442 6709436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00693 22 662 Glycoside Hydrolase AT3G49170 29.709 6.98e-91 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00693 - - gmx:100803987 1038.1