Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00674 ATGAAAAATACAAAAGGTGGTGGCGGCGGCGGCGATAGTGGTGGCACAATGTTAGTAGAACAACGAAACGGCGTCGTTCGCCGGCCTAAGCTAGGAGCTATATTTCGTAGCTCCGATCCAACCTCGCTCTACACACCCAACCACTACGACGAAGATCACAACCGCCGCGTGACCAGCGGCTCCGCCCAAGCGGACAGCAGCAGCAGCAGCAATAACGCCTCTCCTTACAACATGTCTCCATACAACAACACCACCAGCAGCGTCTCTTCCTCTCCATACAACAAATCGCCATGGCTCTTACCTTCTATAAACTTCTTCCACCAAAACGAAATCGAAAACGACGCGTTTTACTCCCAAAACGGCCTCATCGGATCCATCGTTCGCGAAGAAGGACACATCTACTCCCTCGCCGTCAACGGAAGCTTGTTGTACACAGGCTCTGAGAGCAAGAACATTAGGGTTTGGAAAGATCTCAAGGACTTCGCCGGATTCAAATCCAACAGCGGATTCGTCAAAACGATCGTAATCTCCGACGAGAAAATCTACACCGGTCACCAAGACGGCAAGATCAGAGTCTGGAAGGTTTCTAAGAAGAATCCAAGCTCATACAAGCGCGTTGGAAGCTTGCCAACGTTTAAGGAATACTTTAAGAGTTCAATGAACCCTAAGAATTACGTCGAAGTTCGGAGGAATCGAAGCGCCGTTAAGGTGAAGCATTTCGACGCCGTTTCGACCTTGAGCTTGGACGAAGAAGCAGGATTGTTATATTCTGGATCTTGGGATAAGACGGTTAAGGTTTGGAGAATCTCCGATTCCAAGTGCTTAGAATCCATTGACGCCCACGAGGACGCCGTGAATTCGGTGGTTGCGGCGTTTGGGGCGTTTGTGCTCACCGGCGCCGCCGATGGGACAGTCAAGATGTGGCGGAGGAAGCAAGTGAGTGAGAAGAAGACGAGGCACGTGATCGATAGAATTTTGCTGAGGCAGGAGAACGCCGTCACGGCGCTGGCGGTGAACCGGTCGGCGGCGGTGGTTTACGCCGCGTCGTCCGACGGATTGGTGAATTTCTGGGAGCAGGATCTGAAGGGCGGCGAGCTGTGTCACGGCGGAGTTTTGAGAGGACATAAACTCGCTGTGCTTTGCCTTGCCGTGGCCGGAAACTTGGTGTTCAGCGGCTCTGCCGATAAGAATATATGCGTGTGGAAGCGCAACGAGAGCGGCATCCACACGTGTCTTTCGGTGCTCTCCGGCCACACTGGGCCGGTGAAGTGTCTCACCGTCAAAGAAGAGGAAGACCGCCGCCAAGGTCAACGCCGAAAAGGTGACCAGCGATGGATTATTTACACTGGGAGCTTGGATAACTCTGTGAAGGTGTGGCGCGTGTCTGAGAACGCGCCGGAGTTGAAGATGATCCAAGGGTGGCCATTGCCGAGTCATGGCGGCACACCGGCCCGTGATAATTCTTCCACGGCAGGGTCGAGTCCGTCGTCTTTGCCGGTGACAAGTGCAATTAGCGGCAATTTCAACAATAATCTACAAATAATTATCAATAATAACAATGATGTCTACCCAAAAAGGTTGCAGTCTCAAAGTTAG 1596 0.5219 MKNTKGGGGGGDSGGTMLVEQRNGVVRRPKLGAIFRSSDPTSLYTPNHYDEDHNRRVTSGSAQADSSSSSNNASPYNMSPYNNTTSSVSSSPYNKSPWLLPSINFFHQNEIENDAFYSQNGLIGSIVREEGHIYSLAVNGSLLYTGSESKNIRVWKDLKDFAGFKSNSGFVKTIVISDEKIYTGHQDGKIRVWKVSKKNPSSYKRVGSLPTFKEYFKSSMNPKNYVEVRRNRSAVKVKHFDAVSTLSLDEEAGLLYSGSWDKTVKVWRISDSKCLESIDAHEDAVNSVVAAFGAFVLTGAADGTVKMWRRKQVSEKKTRHVIDRILLRQENAVTALAVNRSAAVVYAASSDGLVNFWEQDLKGGELCHGGVLRGHKLAVLCLAVAGNLVFSGSADKNICVWKRNESGIHTCLSVLSGHTGPVKCLTVKEEEDRRQGQRRKGDQRWIIYTGSLDNSVKVWRVSENAPELKMIQGWPLPSHGGTPARDNSSTAGSSPSSLPVTSAISGNFNNNLQIIINNNNDVYPKRLQSQS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00674 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 318 IPR001680 GO:0005515
Aip03g00674 531 MobiDBLite consensus disorder prediction 482 498 - -
Aip03g00674 531 MobiDBLite consensus disorder prediction 471 498 - -
Aip03g00674 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 358 IPR001680 GO:0005515
Aip03g00674 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 277 IPR001680 GO:0005515
Aip03g00674 531 MobiDBLite consensus disorder prediction 59 87 - -
Aip03g00674 531 MobiDBLite consensus disorder prediction 1 87 - -
Aip03g00674 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 273 - -
Aip03g00674 531 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 17 474 - -
Aip03g00674 531 Pfam WD domain, G-beta repeat 370 402 IPR001680 GO:0005515
Aip03g00674 531 Pfam WD domain, G-beta repeat 410 459 IPR001680 GO:0005515
Aip03g00674 531 CDD WD40 130 460 - -
Aip03g00674 531 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 17 474 IPR045182 -
Aip03g00674 531 Pfam Nucleoporin Nup120/160 128 281 - -
Aip03g00674 531 Gene3D - 116 231 IPR015943 GO:0005515
Aip03g00674 531 Gene3D - 323 527 IPR015943 GO:0005515
Aip03g00674 531 PRINTS G protein beta WD-40 repeat signature 181 195 IPR020472 -
Aip03g00674 531 PRINTS G protein beta WD-40 repeat signature 255 269 IPR020472 -
Aip03g00674 531 PRINTS G protein beta WD-40 repeat signature 447 461 IPR020472 -
Aip03g00674 531 SMART WD40_4 408 460 IPR001680 GO:0005515
Aip03g00674 531 SMART WD40_4 319 358 IPR001680 GO:0005515
Aip03g00674 531 SMART WD40_4 365 402 IPR001680 GO:0005515
Aip03g00674 531 SMART WD40_4 157 194 IPR001680 GO:0005515
Aip03g00674 531 SMART WD40_4 271 309 IPR001680 GO:0005515
Aip03g00674 531 SMART WD40_4 229 268 IPR001680 GO:0005515
Aip03g00674 531 SMART WD40_4 119 156 IPR001680 GO:0005515
Aip03g00674 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 402 IPR001680 GO:0005515
Aip03g00674 531 Gene3D - 232 322 IPR015943 GO:0005515
Aip03g00674 531 SUPERFAMILY WD40 repeat-like 129 468 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00674 Aip-Chr3 6585253 6586989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00674 175 470 Acyl Lipid Metabolism Gene Families AT3G18860 25.552 6.75e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00674 - - adu:107476730 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00674 03 6585253 6586989 Aip03g00674 03 6585253 6586989 ECH