Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00551 ATGGCGTCTCGTCCGCAGAGAGAAGACCTCATTGCTAAAGTCTCTGGTTTGTTTAACGGCAAACTTGACATCCTTGTGAACAATGTTGGAACCAATTTTCAAAAGGAGACCACTGAGGTCACAGAGGAAGACTTCAGATTCCTTGTGAGCACGAATCTTGAATCTGCTTTCCACATAAGCCAGCTTGCTTATCCACTCCTCAAATCATCACAGGCTGCAAGCATAGTCTTCATATCCTCCATTGCAGGCGTGGTCTCACTAGACATGAAAGGAACCATATACAGTGCAGCAAAAGGAGCAATCAACCAACTGACAAGGAATTTGGCATGTGAATGGGCAAAACATAACATAAGGACTAATTGCATTGCGCCGGGGCCAATCAAAACCAGTCTGGCTGAAAGGGTATTAAACTTAGACGGAGAGACAAAACTGTTGGATGCTTTTGTTTCGCGAACTCCTCTTGGACGGATGGGAGAGGCAGGGGAGGTGTCTTCCATTGTAGCATTTCTTTGCATGCCTGCGGCTTCTTACATAACTGGACAGACCATTTGTGTCGATGGCGGCTTAACTGTCAACGGTGTCTAA 585 0.4598 MASRPQREDLIAKVSGLFNGKLDILVNNVGTNFQKETTEVTEEDFRFLVSTNLESAFHISQLAYPLLKSSQAASIVFISSIAGVVSLDMKGTIYSAAKGAINQLTRNLACEWAKHNIRTNCIAPGPIKTSLAERVLNLDGETKLLDAFVSRTPLGRMGEAGEVSSIVAFLCMPAASYITGQTICVDGGLTVNGV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00551 194 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 81 109 IPR020904 GO:0016491
Aip03g00551 194 PANTHER TROPINONE REDUCTASE 2 194 IPR045000 GO:0016491
Aip03g00551 194 PRINTS Glucose/ribitol dehydrogenase family signature 94 113 IPR002347 -
Aip03g00551 194 PRINTS Glucose/ribitol dehydrogenase family signature 20 31 IPR002347 -
Aip03g00551 194 PRINTS Glucose/ribitol dehydrogenase family signature 153 173 IPR002347 -
Aip03g00551 194 PRINTS Glucose/ribitol dehydrogenase family signature 115 132 IPR002347 -
Aip03g00551 194 PRINTS Glucose/ribitol dehydrogenase family signature 67 83 IPR002347 -
Aip03g00551 194 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 194 - -
Aip03g00551 194 Gene3D - 1 193 - -
Aip03g00551 194 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 113 IPR002347 -
Aip03g00551 194 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 20 31 IPR002347 -
Aip03g00551 194 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 81 IPR002347 -
Aip03g00551 194 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 191 IPR036291 -
Aip03g00551 194 Pfam Enoyl-(Acyl carrier protein) reductase 6 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00551 Aip-Chr3 5413061 5414414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00551 4 193 Miscellaneous Gene Families AT2G29290 64.211 1.07e-79 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00551 K08081 - gmx:100780806 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00551 03 5413061 5414414 Aip03g00551 03 5413061 5414414 ECH