Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00461 ATGGCGTCTCAGGCTAGCCTTCTCCTTCAAAAACAGCTCAAAGATCTTTGCAAGAACCCTGTTGATGGGTTCTCCGCAGGTTTGGTCGATGAAAGCAACATCTTTGAATGGAGTGTAACCGTAATTGGACCTCCCGATACTCTCTATGAGGGGGGATTTTTCAATGCCATCATGAGCTTTCCATCCAATTACCCAAACAGCCCACCAACAGTGAAATTCACTTCCGAGATATGGCACCCCAATGTATATCCTGATGGTCGAGTTTGCATATCAATTCTTCACCCTCCCGGTGACGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGAATCCTGTTCATACGGTAGAGAGTATAGTGCTGAGTATTATATCAATGCTTTCGAGCCCCAATGATGAATCTCCAGCAAACGTCGAAGCTGCCAAGGAATGGAGAGAGAGGAGAGATGATTTCAAGAAGAAGGTTAGTCGATGCGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4551 MASQASLLLQKQLKDLCKNPVDGFSAGLVDESNIFEWSVTVIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWNPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRERRDDFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00461 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Aip03g00461 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Aip03g00461 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
Aip03g00461 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Aip03g00461 166 CDD UBCc 17 159 IPR000608 -
Aip03g00461 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Aip03g00461 166 SMART ubc_7 7 164 - -
Aip03g00461 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Aip03g00461 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00461 Aip-Chr3 4509809 4513365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00461 11 131 Miscellaneous Gene Families AT3G17000 30.769 1.91e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00461 K10575 - jre:109004351 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00461 03 4509809 4513365 Aip03g00461 03 4509809 4513365 ECH