Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00447 ATGGCACCTAAGGCAGAGAAGAAACCAGCTGAGAAGAAGCCGGCTGAGGAGAAGAAATCCGCCGTGGCTGAGAAAGCTCCACCGGCGGAGAAGAAGCCAAAGGCAGGAAAGAAGCTGCCGAAGGAAGGTGCCGCCGCCGGGGACAAGAAGAAGAAGAGGAACAAGAAGAACGTTGAGACCTACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTCCACCCTGACATCGGTATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAAGAAGCTTCTAGACTTGCCCGATACAACAAGAAGCCAACTATCACCTCGAGGGAAATCCAGACCGCGGTCAGACTTGTGCTGCCCGGAGAGTTGGCTAAGCACGCCGTTTCTGAGGGTACCAAGGCGAAATTGGATCTGCTCGATCCTTTTGTGGATGGAAATGTAGAATTGACGGTATGGCGTAATATGGGCCTTCCTGATTTAAAAAAAAAAAAACCACGAAGATATTTCCTCCTCTTATATAGTCAACTGGTCAACACGAACGTGCTAGCTAGCAAGTGCGAAGTAGCAGTTAACGGTGATGGCCATGGCTTCAGCAACCTCGAGTCTTACGATCCTGAGATCTCCTTCAGCTCTTGTATCACCGATTTTTCATGCGACAAAGATGTTGATGCGCAGCGGTTCCTTCAAACCTTCAAATCTAGGGAATGGCTTGGAGTGAAGTCGACCGTACTGGAGCAGGCGGAGTCACTCCGTAGCGGTGGAACTTCCCTCACGCTTTCCAAGAATGGTTGGAGCGTATTTGATGCTATTGGAGTAGCGAATCGTCTCAGATCTCAATTCTCGCAAATTGAAGGGTTGGTTATCAGATCCGAGGATGGAAAGCAACTACGCTCATTCAATTTGCTTGAAGAAGATCCAAGCCAAGAGTTACGTGGTGTGGAGAGGAGAATACTATTGGAAACATTGGCTGCTGAGCTCCCCAAAGGTGCCATTCAATTTTCTTCAAAGCTAGCTAGGATTGAACCAACTTCAGAGGGAGACATCTTGCTGGAACTTGCAGATGGCTCTAAGCTGCATGCAACGAGTGTAATAGGGTGCGATGGGATTGGATCACCGTTGGCTATTGCGCTATCCGCGGACTTGCTACTTATTCAGATGTCCAGGAATCCGCTGGCAGATCGCTGGCTTTGGCCAAGCATAAGTCCACCTGCTTCCACGGGTCGAATTGTGTTGGTTGGAGATGCGTGGCACCCGATGACCCCAAATCTTGGCCAAGGAGCTTGTTGTGCACTTGAGGATGCAGTGGTTCTTGCTAAGAAGCTTGCAGGGGCCATCAAGTCTAAAGAGCAAGACTCTGTTGAAGAAGCTTTCAGGTCGTATGGCTCAGAAAGATGGCGCCGTGTGTTTCCACTAACCGTACGCGCACACCTTGTGGGTTCCATATTGCAGTGGGAGAATCCATTGGTGTGTTCTATTAGGAACAAGATTATCATACCAAAGCTAGCAAGCCTTAAACCGATGCTTGAGCATACAAATTTCACTTGTGAGAGTCTACAAGAAGAGAAGCAATGA 1593 0.4884 MAPKAEKKPAEKKPAEEKKSAVAEKAPPAEKKPKAGKKLPKEGAAAGDKKKKRNKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAKLDLLDPFVDGNVELTVWRNMGLPDLKKKKPRRYFLLLYSQLVNTNVLASKCEVAVNGDGHGFSNLESYDPEISFSSCITDFSCDKDVDAQRFLQTFKSREWLGVKSTVLEQAESLRSGGTSLTLSKNGWSVFDAIGVANRLRSQFSQIEGLVIRSEDGKQLRSFNLLEEDPSQELRGVERRILLETLAAELPKGAIQFSSKLARIEPTSEGDILLELADGSKLHATSVIGCDGIGSPLAIALSADLLLIQMSRNPLADRWLWPSISPPASTGRIVLVGDAWHPMTPNLGQGACCALEDAVVLAKKLAGAIKSKEQDSVEEAFRSYGSERWRRVFPLTVRAHLVGSILQWENPLVCSIRNKIIIPKLASLKPMLEHTNFTCESLQEEKQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00447 530 Pfam FAD binding domain 412 472 IPR002938 GO:0071949
Aip03g00447 530 SUPERFAMILY Histone-fold 41 141 IPR009072 GO:0046982
Aip03g00447 530 Pfam Core histone H2A/H2B/H3/H4 2 124 IPR007125 GO:0003677
Aip03g00447 530 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 393 525 - -
Aip03g00447 530 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 242 383 - -
Aip03g00447 530 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip03g00447 530 Gene3D - 385 504 IPR036188 -
Aip03g00447 530 Gene3D - 239 384 IPR036188 -
Aip03g00447 530 Gene3D Histone, subunit A 22 145 IPR009072 GO:0046982
Aip03g00447 530 SUPERFAMILY FAD/NAD(P)-binding domain 244 503 IPR036188 -
Aip03g00447 530 MobiDBLite consensus disorder prediction 1 53 - -
Aip03g00447 530 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 393 525 IPR044560 -
Aip03g00447 530 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip03g00447 530 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip03g00447 530 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip03g00447 530 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip03g00447 530 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip03g00447 530 SMART h2b3 51 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip03g00447 530 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 242 383 IPR044560 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00447 Aip-Chr3 4413993 4416316 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00447 396 528 Miscellaneous Gene Families AT5G05320 33.103 2.20e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00447 - - lja:Lj2g3v1989110.1 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00447 03 4413993 4416316 Aip03g00447 03 4413993 4416316 ECH