Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00446 atggcgattagGAGTGAAAATAGGGCTCGTGCCGATTACGATTATCTCATAAAGCTTCTCTTGATCGGCGATAGTGGTGTTGGTAAAAGTTGCATCCTTCTACGATTCTCTGATGGTTCTTTCACCACTAGTTTCATCACAACCATAGGTATTGATTTTAAGATAAGAACGATTGAGCTCGATGGCAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTTCGAACAATTACAACTGCTTACTATCGCGGTGCAATGGGAATATTACTAGTCTATGACGTTACAGACGAAGCATCATTTAACAATATCAGGAATTGGATTCGCAACATTGAGCAACATGCTTCAGACAATGTTAACAAGATACTGGTAGGGAACAAAGCTGACATGGATGAAAGTAAAAGGGCCGTGCCGACATCCAAGGGCCAAGAACTTGCTGATGAGTATGGGATCAAATTCTTTGAAACTAGTGCAAAGACAAATTTTAATGTGGAGGAAGTTTTCTTCTCAATAGCAAGGGATATAAAACAAAGGCTTGCTGATAGTGATAACAAGGCAGAGCCTGCAGCGATCAAAATCAACACAGACCAGGGAGCCGGAGCTGGGGAGGCTGCACAAAAATCAGGTTGTTGTGGTTGA 648 0.4182 MAIRSENRARADYDYLIKLLLIGDSGVGKSCILLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQELADEYGIKFFETSAKTNFNVEEVFFSIARDIKQRLADSDNKAEPAAIKINTDQGAGAGEAAQKSGCCG 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00446 215 CDD Rab8_Rab10_Rab13_like 14 181 - -
Aip03g00446 215 Gene3D - 10 214 IPR027417 -
Aip03g00446 215 ProSiteProfiles small GTPase Rab1 family profile. 12 214 - -
Aip03g00446 215 PRINTS Transforming protein P21 ras signature 58 80 - -
Aip03g00446 215 PRINTS Transforming protein P21 ras signature 120 133 - -
Aip03g00446 215 PRINTS Transforming protein P21 ras signature 17 38 - -
Aip03g00446 215 PRINTS Transforming protein P21 ras signature 156 178 - -
Aip03g00446 215 PRINTS Transforming protein P21 ras signature 40 56 - -
Aip03g00446 215 ProSiteProfiles small GTPase Rho family profile. 10 183 - -
Aip03g00446 215 ProSiteProfiles small GTPase Ras family profile. 7 215 IPR001806 GO:0003924|GO:0005525
Aip03g00446 215 SMART ras_sub_4 18 181 - -
Aip03g00446 215 PANTHER LD44762P 7 214 - -
Aip03g00446 215 SMART rho_sub_3 19 181 IPR001806 GO:0003924|GO:0005525
Aip03g00446 215 SMART rab_sub_5 17 181 - -
Aip03g00446 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 187 IPR027417 -
Aip03g00446 215 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Aip03g00446 215 SMART arf_sub_2 1 182 - -
Aip03g00446 215 SMART ran_sub_2 22 213 - -
Aip03g00446 215 PANTHER BNAA07G37610D PROTEIN 7 214 - -
Aip03g00446 215 Pfam Ras family 18 179 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00446 Aip-Chr3 4395271 4399179 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00446 K07901 - gmx:100779203 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00446 03 4395271 4399179 Aip03g00446 03 4395271 4399179 ECH
Aip08g00438 08 3336797 3340406 Aip03g00446 03 4395271 4399179 ECH
Aip08g00438 08 3336797 3340406 Aip03g00446 03 4395271 4399179 PCT