Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00423 ATGGATCTCATCACTTTACTAACCCTCCTTCCAGCATTGTACTTGTGTTTCCTGATCTGGAACTTGTTCGATCAGAAAAGGGACCAAGAGTGCTACATATTGGACTACCAATGTTACAAACCTTCTGATGATAGAAAGCTAGGCACAGAGTTCTGCGGGAAAGTCATCAAAAGATCCCAATCCTTAGGCCTTGATGAGTACAAGTTCCTCCTCAAAGCCATTGTTAGCTCCGGCATTGGTGAGCAAACTTATGCTCCAAGAAACGTCTTCGACGGCCGCGAATCAAACCCTACCCTTATCGACGGTATTGTGGAAATGGAGGAGTTTTTCAACGATAGCATTGAAAAATTGTTGTCGAGGACAGGTGTAAACCCATCGGAGATTGATGTGTTGGTTGTTAATATTTCAATGCTGGCGGTTCTTCCTTCTTTGTCGTCCAGAATCATCAACAAATACAAGCTAAGGCATGACATCAAGGTCTACAACCTCACCGGTATGGGGTGTAGTGCTAGTCTTATTTCTTTGGACATTGTAAAGAACATTTTCAAGTCGCAAAGGAATAAGCTAGCACTCTTGGTAACTTCAGAGAGCTTGAGTCCAAATTGGTATTCAGGTAACGAGAGATCAATGATTCTCGCTAATTGCTTGTTTCGCTGCGGCGGTTGCGCGATTTTGTTGACGAACAAGAGGACATTGAAGCACAAATCAATGTTCATATTGAAGTGTTTGGTGAGAACTCATCATGGAGCTAGAGATGAAGCTTATGGTTGTTGCATTCAAAAGGAAGATGAACAAGGTAGACTTGGTTTTCACCTTGGGAAAACCCTCCCAAAAGCAGCAACAAGAGCTTTCATTGACAATTTGAGGGTGATTTCACCCAAGATTCTTCCAACAAGGGAATTACTAAGATTCTTTGTTGTATACCTAATAAAGAAAATCACAATGTTGGGAAAAAATAACAATTATAACACTCTCAAGGCTAGTTCTGGAGTTATCACAACGACGAAATCGCCGTTAAATTTTAAAACCGGCGTGGATCATTTCTGTATCCACACCGGAGGTAAAGCAGTTATAGACGGAATAGGAATAAGTTTAGATTTGGCTGAGTATGACCTCGAACCGGCGCGAATGACTCTGCACCGGTTCGGGAACACCTCAGCCAGTAGCCTTTGGTATGTTCTAGGGTACATGGAGGCAAAGAAGAGGCTGAGAAAAGGTGAGAGGGTGTTCATGATAAGCTTTGGTGCTGGCTTTAAATGCAATAGCTGTTTGTGGGAAGTGATGAGAGATCTCAAAGGTGATCAAGAGAATGTGTGGGCCGATTGCATTGATAACTACCCACCAAAATCATTGTCTAACCCTTTCATGGAGAAGTATAGTTGGATCAATGATGTTGAGGATGAAAGCACCGCTGAGATCCCTGATTTTCTCAAGTAA 1437 0.4238 MDLITLLTLLPALYLCFLIWNLFDQKRDQECYILDYQCYKPSDDRKLGTEFCGKVIKRSQSLGLDEYKFLLKAIVSSGIGEQTYAPRNVFDGRESNPTLIDGIVEMEEFFNDSIEKLLSRTGVNPSEIDVLVVNISMLAVLPSLSSRIINKYKLRHDIKVYNLTGMGCSASLISLDIVKNIFKSQRNKLALLVTSESLSPNWYSGNERSMILANCLFRCGGCAILLTNKRTLKHKSMFILKCLVRTHHGARDEAYGCCIQKEDEQGRLGFHLGKTLPKAATRAFIDNLRVISPKILPTRELLRFFVVYLIKKITMLGKNNNYNTLKASSGVITTTKSPLNFKTGVDHFCIHTGGKAVIDGIGISLDLAEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLRKGERVFMISFGAGFKCNSCLWEVMRDLKGDQENVWADCIDNYPPKSLSNPFMEKYSWINDVEDESTAEIPDFLK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00423 478 Gene3D - 75 427 IPR016039 GO:0016746
Aip03g00423 478 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 461 IPR012392 GO:0006633|GO:0016020|GO:0016747
Aip03g00423 478 PANTHER 3-KETOACYL-COA SYNTHASE 1 468 IPR012392 GO:0006633|GO:0016020|GO:0016747
Aip03g00423 478 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Aip03g00423 478 SUPERFAMILY Thiolase-like 243 428 IPR016039 GO:0016746
Aip03g00423 478 PANTHER 3-KETOACYL-COA SYNTHASE 1 468 - -
Aip03g00423 478 CDD CHS_like 19 425 - -
Aip03g00423 478 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 345 426 IPR013747 -
Aip03g00423 478 SUPERFAMILY Thiolase-like 17 231 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00423 Aip-Chr3 4163874 4165893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00423 19 475 Acyl Lipid Metabolism Gene Families AT2G28630 70.065 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00423 K15397 - gmx:100809149 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00423 03 4163874 4165893 Aip03g00423 03 4163874 4165893 ECH
Aip08g00452 08 3475648 3477122 Aip03g00423 03 4163874 4165893 ECH
Aip08g00452 08 3475648 3477122 Aip03g00423 03 4163874 4165893 PCT