Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00415 ATGGATAGAAACAGAGCGAAAGGCATTACTTTCACGAAGGAACCGTACATCGAAGATGCAGGGCCACGCATTGTGAAGAGCATGAAGTTCAGTTCCTTATCTGACTCTGAGATTGGAAAACTCGCTGAAGTTCAAGTCTTCAAAGGCTCTTACTATGATCACTTCAAAAAACCCATCCCTGGTGTCCTCTTTTTCTTGTTAGGTCCTGCTAATAAGGAGCTTATTTGCGCCACATGTGGTGGCGACTTTGCTCATTGTCCGGGCCACTTCGGATACTTAAATCTTGCCCTTCCCATCTTCAACATTGGATTCTTGGGTACCATTGTGGAAATATTGAAGTCCATTTGCAAGTGCTGTGCTCGAATTCTTCTCAATGAAGATATACGTAAAGATCGTTTGAAAAAAATGAGAAGACCCAGAATTGATGCACTGGCGAAGGCTGAATTAGCGAAAAAGGTTGTAGAGGCATGCAGCAAAGTATCAATGTGCTCGAGATGTGGATATAAGAATGGTTCGGTAAAGAAGCTTGTGGGTTCGCTAAAAATCACTCATGATCGCTCAAAATGTAATGATAGTAGCATTGAAGAATTTCAAACAGCACTTTCACATGCAAGAGAATCTAGATTGACCAGCGCTGTGGATACTCATATTCTAAACCCATTCCAAGCTTTATCCCTGTTTAAAAGGATGCTGGATGAGGACTGTGAATTACTTTATCTTGCTGAAAGACCAGAGAAACTCATCGTTACAAACATTGCAGTGCCCCCATTGGCTATGCGACCTTCAGTTATAATGGATGGATCACAGAGCAATGAAAATGATGTAACAGAGAGGCTAAAGCAAATAGTCCAAGCTAATGCTCATGTGCGCCAAGAATTAGAAGAAATTGCTTCATTAAGATCTCTGGATGGTTGGGAAACGCTTCAATTTGAGGCTGCTCAATTCATAAATAGTGAGGTTCGTGGTATACCATACCACCAGCAACGGGAAAAGACAATGGCGGGTTTAGTTCAACGCCTTAAAGGGAAGCAGGGACGTTTTCGTGGCAACTTATCTGGGAAACGTGTTGAATTTACTGGCAGGACAGTTATTTCACCGGATCCTAATTTAAAGATTACTGAGGTTGCAGTACCCATGCTTATGGCTCGTATATTGAGTTATCCTGAGCGTGTTTCACATCACAACATTGAAAAGCTGAGACAGTGTATAAGAAATGGTCCTGATAAGTATCCTGGTGCAAGACAATATAGAGATGCCTCGGGTTCCACATGGTTTTTGCTAGTTCCTCACAGGAAGCGCTTTGCAGACCAGCTGAAATTTGGTGATATAGTTGATCGTCATTTGGAAGATGGCGACATTATTCTTTTTAATAGGCAGCCAAGCTTGCATCGGATGTCTATAATGTGTCATAGGGCGAGGATTATGCCTTGGAGAACTTTGAGATTCAATGAATCTGTTTGCAACCCATATAATGCTGATTTTGATGGTGATGAGATGAACTTACATGTGCCACAGACTGAGGAAGCACGGACAGAGGCTATTTTGTTGATGGGGGTGCAAAATAATCTGTGCACACCAAAAAATGGCGAAATTTTGGTTGCCTCTACTCAAGACTTCTTAACCTCTTCCTATCTCATAACTAGAAAAGATACATTTTATGATCGTTCAACCTTTTCACTTATTTGCTCATACATGGGGGATGGCATGGATCTTGTTGATCTGCCAACTCCTGCAATTATTAAGCCAGTTGAGCTTTGGAGTGGTAAACAGTTATTTAGCGTTCTATTGCGCCCAAATGCAAATGTGAGAGTCTATGTGAATCTTACTGTTAAGGAGAAAATATACAGTACAAAGCTTGATGACAGGAAACGAGAAATGAAAACGATGTGCCCAAGTGATGGGTTTGTCTATTTTCGCAATAGTGAGTTGATATCAGGACAACTTGGAAAGGTGACTTTAGGGAATGGAAATAAGGATGGTCTTTTCTCTGTGCTACTAAGAGACTATAAACCACATGCTGCTGCTGCTTGCATGAATCGTGTAGCTAAATTGAGTGCTCGATGGATCGGAAATCATGGGTTCTCAATTGGCATTGATGATGTCCAACCAAAAGAGGTTTTGATAGAACAGAAAGATAAAACAATATCTGATAATTATAAAAAATGTCATGATTTTATAGCAGCTTTCAATAAAGGAAAGCTAGAACTCAAAGCCGGTTGTGATGCTGCTCAGACATTAGAAACTCTGATAACTGGTGTCTTGAATGGTATACGAGATACAGCAGGAAAGGTTTGCATGCAAACCCTACACTGGAGAAATAGCCCACTGATCATGTCGCAGTGTGGCTCCAAAGGATCTCCAATTAATATCAGTCAGATGGTTGCTTGTGTGGGTCAACAATCAGTTGGAGGTCGTCGTGCTCCTAATGGTTTCGTGGACCGTAGTCTTCCTCATTTCCCTAGAAAAGCAAAAACCCCAGCTGCTAAAGGTTTTGTTGCCGAATCTTTTTACAGTGGATTGTCTGCTACTGAGTTTTTCTTCCACACAATGGGAGGGCGTGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACTGGATACATGTCTCGTAGATTAATGAAATGTCTGGAGGATTTGTTCTTACAGTATGATTACACTGTAAGAAATGCTGCTGGTGGTATTGTTCAATTTTGTTATGGAGATGATGGCATGGATCCAGCTGGCATGGAAGGAAAAGATGGAAAACCACTAAATTTTGACCGGCTGTTTTTGAGAAGCCAGGCCATATGTCCAAGTGATGAAGACGATGACATCTTGTCTTCCTCAGATGTGCATGAAGTAGTTCAAAGGAAGCTTTCAGAAGTTGGTATGTGCAAGTTAGTCGAGCAAGAGGCTTCAGCGGATGATTCCTCTGCCGGCTTCGTAAATTCTCTTCAATCCTTTATCAAAGGGAAAATAGAATCAACAGAACCTTCCACCGAAGAGGATTCTGAAAAGCTGAAAAAGTTTATTCAGAGGATTTCTGGGATTACTCGCAGACAACTAGAGGTTTTTCTCGATATTTGTTTATCTCGTTACCATTCAAAAAAAATTGAGGCTGGAACTCCCATCGGAGCAATTGGAGCTCATAGTATTGGAGAGCCTGGAACCCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTGACCCTTGGAGTTCCTCGCATCAAAGAAATTATAAATGGATCCAAAAAGATCAGCACACCAATTATCACTGCAATACTTGAGACAGATAATAATCCAAATACCGCAAGGATAGTAAAAGGTCGCATAGAAAAAACCAACTTAGGCCAGGTCGCAAAGAGTATAAAAGTTGTTATAACTTCAAGATCAGCATCAATTGTCATCTCGCTTGACATGGAAAGAATTCGAGATGCACATCTGCATGTAGATGCCAATATTGTAAGAGAGTCGATTTTGCATACTCCAAAACTAAAATTGAAGCAAGACAATGTTAAGATCTTAGATATCAAAAAGCTCAGGATTGTTCCCCCAGATGGTGATAGAAGTAAAATCCAATTTCAACTTAACCATCTTAAAAATTTGCTTCCTTCAGTTGTTGTGAAGGGAATTAAAACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGAGAAAAAAACTGAAAAGTTCAAATTACTGGTGGAAGGCACGGGTCTTCTAGATGTTATGGGAACTGAAGGGGTTGATGGACGTAATACTCTTAGTAATCATATAGATGAAGTGAGTGAGTCTCTGGGAATTGAAGCTGCTAGAAGGACTATCATTGAGGAGATAAAAGTAGTTATGGGAAGTCACGGTATGAGTATAGACATACGCCATATGATGCTTCTAGCAGATGTGATGACTGTTATGGGCAGAGTCCTTGGAATAACCAGATTCGGAATTCAAAAGATGGGCAAAAGTGTCTTGATGCTTGCGTCTTTTGAGAGGACATCGGATCATCTTTTCAATGCAGCGGTACATGGGACAGAGGACCTGATTGAAGGAGTAAGTGAACGCGTAATCATGGGTATACCGATTCAGATAGGCACCGGAATGATCAAGGTCAAACAAAGGTTGAGTCCTCCAGAGTTGCTTCAAGGAACTCCTCCTATTCTATCTTATATTAGCTAG 4176 0.4092 MDRNRAKGITFTKEPYIEDAGPRIVKSMKFSSLSDSEIGKLAEVQVFKGSYYDHFKKPIPGVLFFLLGPANKELICATCGGDFAHCPGHFGYLNLALPIFNIGFLGTIVEILKSICKCCARILLNEDIRKDRLKKMRRPRIDALAKAELAKKVVEACSKVSMCSRCGYKNGSVKKLVGSLKITHDRSKCNDSSIEEFQTALSHARESRLTSAVDTHILNPFQALSLFKRMLDEDCELLYLAERPEKLIVTNIAVPPLAMRPSVIMDGSQSNENDVTERLKQIVQANAHVRQELEEIASLRSLDGWETLQFEAAQFINSEVRGIPYHQQREKTMAGLVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAVPMLMARILSYPERVSHHNIEKLRQCIRNGPDKYPGARQYRDASGSTWFLLVPHRKRFADQLKFGDIVDRHLEDGDIILFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRSTFSLICSYMGDGMDLVDLPTPAIIKPVELWSGKQLFSVLLRPNANVRVYVNLTVKEKIYSTKLDDRKREMKTMCPSDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKPHAAAACMNRVAKLSARWIGNHGFSIGIDDVQPKEVLIEQKDKTISDNYKKCHDFIAAFNKGKLELKAGCDAAQTLETLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFVDRSLPHFPRKAKTPAAKGFVAESFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKCLEDLFLQYDYTVRNAAGGIVQFCYGDDGMDPAGMEGKDGKPLNFDRLFLRSQAICPSDEDDDILSSSDVHEVVQRKLSEVGMCKLVEQEASADDSSAGFVNSLQSFIKGKIESTEPSTEEDSEKLKKFIQRISGITRRQLEVFLDICLSRYHSKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGSKKISTPIITAILETDNNPNTARIVKGRIEKTNLGQVAKSIKVVITSRSASIVISLDMERIRDAHLHVDANIVRESILHTPKLKLKQDNVKILDIKKLRIVPPDGDRSKIQFQLNHLKNLLPSVVVKGIKTAERVVISKEEDKEKKTEKFKLLVEGTGLLDVMGTEGVDGRNTLSNHIDEVSESLGIEAARRTIIEEIKVVMGSHGMSIDIRHMMLLADVMTVMGRVLGITRFGIQKMGKSVLMLASFERTSDHLFNAAVHGTEDLIEGVSERVIMGIPIQIGTGMIKVKQRLSPPELLQGTPPILSYIS 1391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00415 1391 Pfam RNA polymerase Rpb1, domain 1 24 351 IPR007080 GO:0003677|GO:0003899|GO:0006351
Aip03g00415 1391 Gene3D - 819 877 - -
Aip03g00415 1391 Gene3D RNA polymerase II, clamp domain 15 138 IPR044893 -
Aip03g00415 1391 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1374 - -
Aip03g00415 1391 Pfam RNA polymerase Rpb1, domain 4 730 832 IPR007083 GO:0003677|GO:0003899|GO:0006351
Aip03g00415 1391 Gene3D - 879 929 - -
Aip03g00415 1391 CDD RNAP_III_Rpc1_C 1026 1368 IPR035698 -
Aip03g00415 1391 Gene3D - 1320 1376 - -
Aip03g00415 1391 Pfam RNA polymerase Rpb1, domain 2 353 519 IPR000722 GO:0003677|GO:0003899|GO:0006351
Aip03g00415 1391 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1374 IPR045867 GO:0003899|GO:0006351
Aip03g00415 1391 SMART rpolaneu7 245 547 IPR006592 GO:0003677|GO:0003899|GO:0006351
Aip03g00415 1391 Gene3D - 344 526 - -
Aip03g00415 1391 Gene3D RNA polymerase Rpb1, domain 3 527 700 IPR042102 -
Aip03g00415 1391 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1372 - -
Aip03g00415 1391 Gene3D RNA polymerase ii 386 446 - -
Aip03g00415 1391 Gene3D - 701 818 IPR038120 -
Aip03g00415 1391 Pfam RNA polymerase Rpb1, domain 3 522 701 IPR007066 GO:0003677|GO:0003899|GO:0006351
Aip03g00415 1391 Pfam RNA polymerase Rpb1, domain 5 839 1322 IPR007081 GO:0003677|GO:0003899|GO:0006351
Aip03g00415 1391 CDD RNAP_III_RPC1_N 33 889 IPR035697 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00415 Aip-Chr3 4030340 4042635 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00415 K03018 - gmx:100811292 2115.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00415 03 4030340 4042635 Aip03g00415 03 4030340 4042635 ECH