LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g00404	ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACCGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGTGTCTGGTGCTGGCATCACATAATGGACATGGCTGAAAAGGATGACACAGAGGGTCGATGCCCTGCATGTCGTTCCCCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAGATTCATATGGAGAAAAAGATGAAGAATCAGAAAGCAAAGACTAAATCTTCTGATGGCAGGAAGCAGCTCAGTAGCGTGCGAGTGATTCAGCGCAACCTTGTTTACATAGTTGGGTTGCCTCTCAACTTGGCAGATGAAGAACTTCTCCAGCGCCGAGAATATTTTGGTCAGTACGGGAAGGTCTTAAAAGTGTCGATGTCGCGGACAGCTGCTGGTGTCATTCAGCAGTTTCCAAATGAGACATGCAGTGTATATATTACTTATTCAAAGGAGGAAGAAGCAATTCGCTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTCTAAGGGCTTGTTTTGGGACCACAAAATATTGTCATGCATGGCTCCGAAATGCGCCTTGCAGCAATCCTGATTGTTTATATCTACATGAGGTTGGCTCTCAAGAAGATAGTTTTACAAAAGATGAAATAATTTCAGCATACACCAGAAGTCGAGTTCAGCAAATCACTGGTGCCACAAACAACACGCAAAGGAGGACGGGGAGTATATTACCTCCACCGTTTGATGATGGCATGAATAACTCCTCGGCAAAGCCTATTGTTAAAAATGCTTCAAGTAACTCTGTATGCACGGTAAGAGGTTCACCTCCTAATGGATTTTGTGGGAGACCTGGAGCTCTTCCTTCTAGTTCTTCATGGGGAACCCAAACTACAAATTGTCAGCCCTCTGTGGGAGGTCAATCATGTCAAAATGGACCATCCAAGGCAAAACCTGATACAGTTGGCAGCTCACTACCTTTTTCTGCTGCTGTTGTTGGTACAGTTCAGGCTTCTGCATTGCATTGTGATGTGACAAAAAGGCCACCATCAGGTGATGGGAGTCATGGTATGCCTAGAGTGAAAAATGGGCTGTTGAAACCCATGAAACAATACAATAGTGTCGACATTGTGGCTAGTACAGGTGATAAAACTTTGGCTTCGGACATTTCTCCCGTGCCTACAAAATTGAATAGCCAGTTGTCTTCTCTGACTTCTCAAGATAGTGATAGAGGTAGTTGTACTACACTAAACACCGTAAATTCCACTTACATCACTGGACAATCATGCAGCTCTGGTCCTGAGGAAGCAGTTACTGCTACCAATGAAGAGATTCAGAATTTGTCCTGTGAGTTATCCTCCATTGACATTGATGGAGATGCTGCAAAAGAAAATTCCAGCATAACCAAACCTAGTAGCCCGCCTTCTGATTTCTTGATTAAATCTCCTGAAATTCAACGAACACAGCAAAATGTTGACAAATTTAGAGATTTAATAACTTCAAATGAGGCTGGTAAAGGTGCTAGCTCAGATAATGGGGTTTGTAGTTCAAGGGAACATTTAGATTGGAGATTGGATTCTCATTCACAATTAGTTTCAGATAGTGTTGAAGATGATGTAGCATCTTTTGATAATCAAAGACTTAAGGATCCAGAAGTTGTTTGCCGATCTTATTTGCCAAAGTCAACCAGTTTCCTTCATGTATCAAGCCATTCTAGCCCTCATCTTCAGCAGCTTGGTGAATCATGTACTGGTGCAAATGCTGGTTCTGTGTCAGCTAATGAAAGAGATAGGAATGAATATCTTTCAAATTCCTCTGTATATAGTGGATACCCTGAAAAATTGGTCAGCAGCAGTTCTTATGGTTTGCTTGATGAAAGGAACAGACAAAGCATTGGAAGATTAGTTAGTGAAGCAGTTAATACTGGACGAGATTGTGCTATTGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCTATGGACTTGGATCCATGGGATGATTCAATGACATCACCACATAATTTAGCTAAGTTGTTGGGTGACAACACTGAAAACCAGTCTGGTTCGATGAAGAAATCTAGCTCCTGGAAAGTTCAAAGTAATAATCAATCTAGATTCTCTTTTGCGAGGCAGGAGGAATCCAAATTTCAATCCCATGATGTGCATCCATCTTATGGTGTGAGCCAACCACAGCTAAAGACGTCCTCTGTCATCCATGATTTTGTGGAAGGAGATTACTATATGGATAAATTGGGCATAGCAAATGGTTTTTCCACAAGTAATTTCGAGGATGCTGAAAATATCAGCAGTGGTCATTTTCTTCACTCTAATAACAAGCTTTCAGCTGTTTCAAGAGCACAGGTTTCAGCCCCACCAGGATTTTCAGTTCCAAGCAGGCCGCCACCACCGGGCTTTTCTTCTCATGAGAGAGTGGAGCCGGCTTATGACTCGATGCCTGGGAATTCATTGCTTGACCATTCCTCCTTTTTGAGAAATTCATATCAAACACCCCCAACTGGAAATATCGGTGGTGCAGGGGATATTGAATTTATGGACCCTGCTATTTTGGCTGTTGGTAAAGGGAGATTTCAAGGTGCACTAAACACCCCAGCACTTGACATGCGATCTAATCTCATGCCACAGTTAAATTACTTCGATAATAATGAGGCCAGACTTCAATTATTGATGCAAAGATCTCTCTCACAGCCTCAACAGAATCTTCGATTTCCGGATATTGGGAATACCTTTTCTCAGCTTGGAGATTCTTATGGTATATCTTCAAGGTTAGACCAATCCCAGGTCAGTAATATTTCCCCATACCCTCAGATGTCTCTGCAGCAATCTACGAATGCAGTCATGTCAAATGGCCAGTGGGATGGGTGGAATGAGATGCAAAGTGGAAATAATCTAGGCGTGGCTGAACTTTTGAGAAATGAAAGATTTGGATTCAATAAATTTTACTCGGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGTGATCTGTACAATAGAACATTTGGGATGTGA	3078	0.4178	MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVNEIHMEKKMKNQKAKTKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEELLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNETCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGATNNTQRRTGSILPPPFDDGMNNSSAKPIVKNASSNSVCTVRGSPPNGFCGRPGALPSSSSWGTQTTNCQPSVGGQSCQNGPSKAKPDTVGSSLPFSAAVVGTVQASALHCDVTKRPPSGDGSHGMPRVKNGLLKPMKQYNSVDIVASTGDKTLASDISPVPTKLNSQLSSLTSQDSDRGSCTTLNTVNSTYITGQSCSSGPEEAVTATNEEIQNLSCELSSIDIDGDAAKENSSITKPSSPPSDFLIKSPEIQRTQQNVDKFRDLITSNEAGKGASSDNGVCSSREHLDWRLDSHSQLVSDSVEDDVASFDNQRLKDPEVVCRSYLPKSTSFLHVSSHSSPHLQQLGESCTGANAGSVSANERDRNEYLSNSSVYSGYPEKLVSSSSYGLLDERNRQSIGRLVSEAVNTGRDCAIDKGESSIISNILSMDLDPWDDSMTSPHNLAKLLGDNTENQSGSMKKSSSWKVQSNNQSRFSFARQEESKFQSHDVHPSYGVSQPQLKTSSVIHDFVEGDYYMDKLGIANGFSTSNFEDAENISSGHFLHSNNKLSAVSRAQVSAPPGFSVPSRPPPPGFSSHERVEPAYDSMPGNSLLDHSSFLRNSYQTPPTGNIGGAGDIEFMDPAILAVGKGRFQGALNTPALDMRSNLMPQLNYFDNNEARLQLLMQRSLSQPQQNLRFPDIGNTFSQLGDSYGISSRLDQSQVSNISPYPQMSLQQSTNAVMSNGQWDGWNEMQSGNNLGVAELLRNERFGFNKFYSGYDDSKYRMPNSGDLYNRTFGM	1025

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g00404	1025	SUPERFAMILY	RING/U-box	3	66	-	-
	Aip03g00404	1025	SMART	rrm2_1	111	192	IPR003954	GO:0003676
	Aip03g00404	1025	CDD	RRM_CNOT4	105	204	IPR034261	-
	Aip03g00404	1025	Pfam	RING/Ubox like zinc-binding domain	9	61	-	-
	Aip03g00404	1025	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	112	190	IPR000504	GO:0003723
	Aip03g00404	1025	SMART	rrm1_1	111	192	IPR000504	GO:0003723
	Aip03g00404	1025	CDD	mRING-HC-C4C4_CNOT4	9	58	IPR039515	-
	Aip03g00404	1025	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	1	1025	IPR039780	GO:0004842\|GO:0030014
	Aip03g00404	1025	Gene3D	-	111	192	IPR012677	-
	Aip03g00404	1025	MobiDBLite	consensus disorder prediction	302	332	-	-
	Aip03g00404	1025	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	110	196	IPR000504	GO:0003723
	Aip03g00404	1025	MobiDBLite	consensus disorder prediction	360	379	-	-
	Aip03g00404	1025	SUPERFAMILY	RNA-binding domain, RBD	104	190	IPR035979	GO:0003676
	Aip03g00404	1025	MobiDBLite	consensus disorder prediction	296	335	-	-
	Aip03g00404	1025	MobiDBLite	consensus disorder prediction	248	267	-	-
	Aip03g00404	1025	ProSiteProfiles	Zinc finger RING-type profile.	9	57	IPR001841	-
	Aip03g00404	1025	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN	1	1025	-	-
	Aip03g00404	1025	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	77	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g00404	Aip-Chr3	3919145	3926541	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g00404	K10643		-	gmx:100813427	1522.68

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g00404	03	3919145	3926541	Aip03g00404	03	3919145	3926541	ECH