Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00282 ATGCAAGCAACCATGGTGGTGGCGCCACAACCCCTTCTCTCTCCCTTCCCAAGCTCAATCCTCAAGTCCTCTTTCTCCGGCGTCTCCATCAACTTGTCTCCTCAATCCCAATTTGCATCCCTCTCTGCCTCCGCCGCCAAGCACCTCACCGTCGTCGCCGCCACCAAGAAGGCCGTCGCCGTCCTCAAGGGTAACTCCCCCGTCGAAGGCGTCGTCACTCTCACCCAGGATGACAACGGCCCTACTACTGTTAATGTTCGTGTTACTGGCCTTACTCCAGGTCTTCATGGATTTCACCTACATGAGTATGGTGATACCACAAACGGCTGTATTTCAACAGGAGCGCATTTCAACCCGAATAACCTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGATGGTGTTGCAGAGGCAACAATCGTCGATAAGCAGATACCACTCACTGGCCCCAATTCAGTTGTTGGAAGAGCATTCGTGGTTCATGAACTTGAGGATGATCTTGGAAAGGGTGGGCATGAACTTAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCATGTGGTGTAGTTGGTCTGACTCCACTGTAA 624 0.5176 MQATMVVAPQPLLSPFPSSILKSSFSGVSINLSPQSQFASLSASAAKHLTVVAATKKAVAVLKGNSPVEGVVTLTQDDNGPTTVNVRVTGLTPGLHGFHLHEYGDTTNGCISTGAHFNPNNLTHGAPEDEVRHAGDLGNIVANADGVAEATIVDKQIPLTGPNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00282 207 PRINTS Cu-Zn-superoxide dismutase family signature 97 119 IPR001424 GO:0006801|GO:0046872
Aip03g00282 207 PRINTS Cu-Zn-superoxide dismutase family signature 133 142 IPR001424 GO:0006801|GO:0046872
Aip03g00282 207 PRINTS Cu-Zn-superoxide dismutase family signature 152 174 IPR001424 GO:0006801|GO:0046872
Aip03g00282 207 PRINTS Cu-Zn-superoxide dismutase family signature 177 203 IPR001424 GO:0006801|GO:0046872
Aip03g00282 207 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 97 107 IPR018152 -
Aip03g00282 207 Pfam Copper/zinc superoxide dismutase (SODC) 68 202 IPR001424 GO:0006801|GO:0046872
Aip03g00282 207 CDD Cu-Zn_Superoxide_Dismutase 56 199 IPR001424 GO:0006801|GO:0046872
Aip03g00282 207 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 191 202 IPR018152 -
Aip03g00282 207 Gene3D Superoxide dismutase, copper/zinc binding domain 52 206 IPR036423 GO:0006801|GO:0046872
Aip03g00282 207 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 1 49 205 - -
Aip03g00282 207 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 49 205 IPR024134 -
Aip03g00282 207 SUPERFAMILY Cu,Zn superoxide dismutase-like 58 204 IPR036423 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00282 Aip-Chr3 2757306 2760435 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00282 K04565 - pda:103698816 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00282 03 2757306 2760435 Aip03g00282 03 2757306 2760435 ECH