Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00280 ATGGCGTTAGCACTGCCTTCGCTTTCTTCTACTTCTTCTTCGTTTCTGCAGCAAAACTTCACTGGAAGCTCCAAGGGACCCACTTGCAACAACACCAACAACACCTCAAGCTTTTTGGTCTTTGCTCAAAAGAAGGCAAAGAAAATCCGAAAGATTATATTGAAGGAAGATGTAGCTGAAGTAGGAAAGAAAGGACAACTTATTGATGTTAAAGCTGGTTTCTACAGAAACTATCTTCTTCCCACTGGAAAGGCACAGATTGTTACTCCTCTTCTGCTCAAGGAAATGAAGTTAGAGGAAGAAAGAATTGAGGCCGAGAAAAGACGGGTAAAAGAAGAGGCACAGCAACTTGCTCGAATTTTTGAAACAGTTGGGGCTTTCAAGGTGAAGCGGAAAGGTGGTAAAGGAAAACTAATTTTTGGAAGTGTTACAGCTCAAGATCTTGTTGACATTATCAAAGCGCAGCTTCAAAGGGAGGTGGACAAGAGAATTGTCGAACTTCCGGAGATACGAGAAACCGGAGAGTATATCGCAGAGTTAAAGCTGCATCCGGAAGTTACAGCGAGAGTAAGGTTGAATGTCTTTGCTAACTAA 594 0.4226 MALALPSLSSTSSSFLQQNFTGSSKGPTCNNTNNTSSFLVFAQKKAKKIRKIILKEDVAEVGKKGQLIDVKAGFYRNYLLPTGKAQIVTPLLLKEMKLEEERIEAEKRRVKEEAQQLARIFETVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKAQLQREVDKRIVELPEIRETGEYIAELKLHPEVTARVRLNVFAN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00280 197 Pfam Ribosomal protein L9, N-terminal domain 51 96 IPR020070 -
Aip03g00280 197 PANTHER 50S RIBOSOMAL PROTEIN L9, CHLOROPLASTIC 5 197 - -
Aip03g00280 197 TIGRFAM L9: ribosomal protein bL9 51 195 IPR020594 GO:0003735|GO:0005840|GO:0006412
Aip03g00280 197 Pfam Ribosomal protein L9, C-terminal domain 112 194 IPR020069 -
Aip03g00280 197 Hamap 50S ribosomal protein L9 [rplI]. 50 197 IPR020594 GO:0003735|GO:0005840|GO:0006412
Aip03g00280 197 Gene3D - 111 197 IPR036791 -
Aip03g00280 197 SUPERFAMILY L9 N-domain-like 51 106 IPR009027 -
Aip03g00280 197 Coils Coil 93 120 - -
Aip03g00280 197 ProSitePatterns Ribosomal protein L9 signature. 62 89 IPR020070 -
Aip03g00280 197 SUPERFAMILY Ribosomal protein L9 C-domain 109 196 IPR036791 -
Aip03g00280 197 Gene3D - 51 110 IPR036935 -
Aip03g00280 197 PANTHER 50S RIBOSOMAL PROTEIN L9 5 197 IPR000244 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00280 Aip-Chr3 2729417 2731904 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00280 K02939 - gmx:100500390 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00280 03 2729417 2731904 Aip03g00280 03 2729417 2731904 ECH