Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00266 ATGGCTCCGATTCCGTCAGAGAACGGTGTAGATGGAGACGACGAGAGAGAAGAAGAGGAAGAGGAAGAAGTTGAAGAAGACGAAGAAGAAGAGGAGGAGGAAGAAGAAGACGAAGAGGAGCCACGGCTTAAGTACCAGAGAATGGGAGGGAGCATACCTACGATGCTTGCCACCGATGCTGCGTCATGCATCGCCGTCGCCGAGCGGATGATCGCGCTCGGCACTCAGGGCGGCACTGTTCACATCCTCGATTTTCTCGGCAATCAGGTGAAAGAATTCGCCGCCCATGCTTCCGTTGTCAACGACCTTAGCTTTGACATAGAAGGGGAGTTTATTGGAAGCTGTTCCGATGATGGATCAGTTGTTATAAACAGTCTCTTCACTGATGAGAAAATGAAATTTGAGTACCAACGACCAATGAAAGCGATTGCATTGGACCCAGAATATGCAAGGAATGCGTCTAGGAGATTTGTTGCTGGTGGTTTAGCAGGTCATTTGTATTTAAATTCGAAGAAATGGTTGGGCTATCGTGACCAGGTTTTGCACACCGGGGAAGGTCCAATACATGCTGTGACATGGAGAACAAGTCTTGTTGCTTGGGCAAATGATGCAGGGGTGAAGGTTTATGATACTGCCAATGACCAGCGTATAACATTTATCGAAAGACCGCGAGGAAGCCCACGCCCTGAGCTTCTGCGTCCTCACTTGGTTTGGCAGGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTGAAAATTGTTTCTCTAAGGACAAATAACCATAAAGCAGCCAATGGGACATACAGGCAAGTTCCTTTGTCTGGTATGGTGCAGGTTGATATTATGGCATCCTTTCAGACTGGCTATTTCATATCAGGCATTGCCCCCTTTGGTGATGTATTGGTAGTTCTAGCTTATATTCCTGGAGAGGAAGATGAAAATAAGGATTTTAGTAGTACCGCTCCTTCGCGGCAGGGCAATGCACAAAGGCCAGAAGTTAGAATAGTATCATGGAACAATGATGAACTTTCAACTGATGCTCTACCGGTACATGGGTTTGAGCATTACAAGGCGAAAGACTATTCTCTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCCCCAAAAGATGTAGTTATTGCAAAGCCAAGGGATACGGAAGATCATATTGCATGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGCAGTTGAATCTGGTCAGGGACGCAGTGAACTTCTTGATGAGGTAGGATCGAGGTACCTAGATCATTTGATTGTGGAACGAAAATATGGTGAAGCAGCTTCTCTATGTCCCAAGTTGCTGCGAGGATCAGCTTCAGCATGGGAGAGATGGGTATTTCACTTTGCCCACCTTCGTCAACTCCCTGTTTTGGTTCCTTACATGCCAACAGAAAACCCTAGACTACGTGATACTGCTTATGAGGTTGCCCTTGTGGCATTGGCTACAAATCCATCTTATCATAAGGATCTCTTGTCCACTGTGAAATCATGGCCATCTGTAATTTATTCTGCGTTACCTGTAATTTCAGCCATCGAACCTCAGCTCAATACTTCATCCATGACCGATTCGCTCAAGGAGGCATTGGCAGAGTTGTATGTTATTGCTGGGCAATACGATAAAGCATTTTCATTTTATGCTGATCTTATGAAACCAGAACTCTTTGATTTCATTGATAAATATAACCTACAAGATTCAATCCATGAAAAGGTTGTCCAATTGATGATGTTGGATTGCAAGCGTGCAGTTCCTTTATTGATCCAGCATAGGGACTTAATAAGTCCACAAGAAGTTGTGAAGCAACTTCTAAATGCTGATGTTAAGTGTGACTGCAGATACTTTTTACATTTGTATCTCCATTCACTATTTGAAGTAAATCCGCATGCTGGGAAAGACTTTCATGATATACAGGTAGAACTCTATGCAGATTATGATCCAAAGATGCTGCTACCTTTTCTACATAGCAGTCAGCACTATACTCTTGAGAAGGCCTATGAAATTTGCACTAAAAAAGAGCTACTGAAGGAGCAAGTTTTCATCTTAGGAAGGATGGGAAACTCAAAGCAAGCCCTAGCAGTTATTATAAATAAACTGGGGGACATTAAGGAGGCTGTAGAGTTTGTCACTATGCAGAATGATGATGAACTCTGGGAAGAATTAATCAAGCAATGCATTGACAAGCCTGAAATGGTGGGCATGCTATTGGAGCACACAGTTGGAAATCTTGATCCCCTCTACATTGTAAATAAGGTTCCCAATGGGTTGGAAATACCTCGGTAA 2358 0.4406 MAPIPSENGVDGDDEREEEEEEEVEEDEEEEEEEEEDEEEPRLKYQRMGGSIPTMLATDAASCIAVAERMIALGTQGGTVHILDFLGNQVKEFAAHASVVNDLSFDIEGEFIGSCSDDGSVVINSLFTDEKMKFEYQRPMKAIALDPEYARNASRRFVAGGLAGHLYLNSKKWLGYRDQVLHTGEGPIHAVTWRTSLVAWANDAGVKVYDTANDQRITFIERPRGSPRPELLRPHLVWQDDTLLVIGWGTSVKIVSLRTNNHKAANGTYRQVPLSGMVQVDIMASFQTGYFISGIAPFGDVLVVLAYIPGEEDENKDFSSTAPSRQGNAQRPEVRIVSWNNDELSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAAVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSYHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIAGQYDKAFSFYADLMKPELFDFIDKYNLQDSIHEKVVQLMMLDCKRAVPLLIQHRDLISPQEVVKQLLNADVKCDCRYFLHLYLHSLFEVNPHAGKDFHDIQVELYADYDPKMLLPFLHSSQHYTLEKAYEICTKKELLKEQVFILGRMGNSKQALAVIINKLGDIKEAVEFVTMQNDDELWEELIKQCIDKPEMVGMLLEHTVGNLDPLYIVNKVPNGLEIPR 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00266 785 PIRSF Vps41 1 785 IPR016902 GO:0034058|GO:0046907
Aip03g00266 785 Gene3D Tetratricopeptide repeat domain 644 785 IPR011990 GO:0005515
Aip03g00266 785 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 785 IPR045111 GO:0006623
Aip03g00266 785 SUPERFAMILY WD40 repeat-like 58 262 IPR036322 GO:0005515
Aip03g00266 785 MobiDBLite consensus disorder prediction 1 45 - -
Aip03g00266 785 MobiDBLite consensus disorder prediction 11 39 - -
Aip03g00266 785 Pfam Region in Clathrin and VPS 613 755 IPR000547 GO:0006886|GO:0016192
Aip03g00266 785 SMART CLH_2 612 759 IPR000547 GO:0006886|GO:0016192
Aip03g00266 785 Coils Coil 10 40 - -
Aip03g00266 785 Gene3D - 8 280 IPR015943 GO:0005515
Aip03g00266 785 SMART WD40_4 174 210 IPR001680 GO:0005515
Aip03g00266 785 SMART WD40_4 86 125 IPR001680 GO:0005515
Aip03g00266 785 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 612 759 IPR000547 GO:0006886|GO:0016192
Aip03g00266 785 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00266 Aip-Chr3 2630403 2638052 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00266 K20184 - gmx:100804340 1400.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00266 03 2630403 2638052 Aip03g00266 03 2630403 2638052 ECH