Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00230 ATGTATAGTAATTTCAAGGAGCAAGCGATAGAGTACGTGAAGCAAGCGGTGCAGGAGGACAACAATGGCAACTACGCCAAGGCCTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACCCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCTATCACGCTGAAATTCACCGAGTACCTTCGTCGTGCCGAGGAGATCCGTGCTGTTCTTGACGACGGTGGGCCTGGGCCTGCCTCCAACGGGGACGCGGCCGTTGCCACCAGGCCCAAGACCAAGCCCAAGGACGGAGAAGGAGGCAGCGGAGGTGGGGACGGGGAGGATCCCGAGCAGGCCAAGCTGAGGGCAGGTTTGAACTCTGCCATCATTAGGGAGAAGCCTAACGTCAAGTGGAATGACGTGGCGGGTTTGGAGAGCGCCAAGCAGGCCTTGCAGGAGGCGGTTATCTTGCCCGTTAAGTTTCCTCAATTCTTCACTGGTAAAAGACGGCCTTGGAGAGCTTTTTTGTTGTACGGACCACCCGGAACTGGTAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCTACATTTTTCAGTGTTTCTTCATCGGACTTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTAGTTTCAAATCTTTTCCAAATGGCCCGGGATAGTGCACCTTCTATCATATTTGTTGATGAAATAGATTCGCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGTATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACGAATACACCTTATGCTCTTGACCAGGCCATAAGGCGGCGTTTTGATAAGCGTATATACATTCCACTACCAGATTTGAAAGCCCGCCAACACATGTTCAAGGTGCATCTAGGCGATACACCTCATAACTTGACCGAGAGTGATTTTGAACACTTGGCACGCAAGACAGAGGGATTTTCAGGTTCAGATATATCTGTTTGTGTGAAGGATGTTTTATTTGAACCCGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGGATCCTGAGGGAATGTGGATCCCATGTGGACCAAAGCAACAGGGTGCAATACAAATCACAATGCAAGACCTTGCCGCAAAAGGACTTGCTGCTAAGATCCTTCCGCCACCTATATCGAGAACAGATTTTGACAAGGTGCTTGCTAGACAAAGGCCTACTGTAAGCAAAGCTGATCTAGACGTACACGAGAGATTCACAAAGGAGTTTGGAGAGGAGGGTTAA 1314 0.4855 MYSNFKEQAIEYVKQAVQEDNNGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITLKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGGSGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDSAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKDPEGMWIPCGPKQQGAIQITMQDLAAKGLAAKILPPPISRTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00230 437 Pfam ATPase family associated with various cellular activities (AAA) 171 300 IPR003959 GO:0005524|GO:0016887
Aip03g00230 437 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 437 - -
Aip03g00230 437 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Aip03g00230 437 Gene3D - 302 417 - -
Aip03g00230 437 ProSitePatterns AAA-protein family signature. 272 291 IPR003960 GO:0005524|GO:0016887
Aip03g00230 437 PANTHER AAA DOMAIN-CONTAINING 1 437 - -
Aip03g00230 437 CDD AAA 137 300 - -
Aip03g00230 437 Gene3D - 129 425 IPR027417 -
Aip03g00230 437 MobiDBLite consensus disorder prediction 73 113 - -
Aip03g00230 437 SMART smart 2 79 IPR007330 -
Aip03g00230 437 Pfam Vps4 C terminal oligomerisation domain 370 434 IPR015415 -
Aip03g00230 437 MobiDBLite consensus disorder prediction 91 113 - -
Aip03g00230 437 SMART AAA_5 166 302 IPR003593 -
Aip03g00230 437 CDD MIT_VPS4 4 77 IPR045253 -
Aip03g00230 437 Gene3D - 6 75 - -
Aip03g00230 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 433 IPR027417 -
Aip03g00230 437 SUPERFAMILY MIT domain 2 81 IPR036181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00230 Aip-Chr3 2281538 2285762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00230 165 358 Calmodulin-binding Proteins AT3G56690 36.735 1.41e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00230 K12196 - gmx:100788150 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00230 03 2281538 2285762 Aip03g00230 03 2281538 2285762 ECH
Aip08g00639 08 5963637 5966127 Aip03g00230 03 2281538 2285762 ECH
Aip08g00640 08 5967274 5971796 Aip03g00230 03 2281538 2285762 PCT