Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00207 ATGGCGATCCTCTATGCCTTGGTGGCCAGGGGCACAGTGGTGCTGGCGGAGTTCAGCGCTGTCACCGGGAATACTGGCGCTGTGGCACGCCGCATCCTGGAGAAGCTCCCGGCGGAGGCCGAGTCCAGGCTCTGCTTTTCTCAGGACCGATACATCTTCCACATACTCCGTTCCGATGGCCTCTCATACCTCTGTATGGCCAACGACACCTTCGGAAGGAGAATCCCTTTTTCATACTTAGAAGATATCCAAATGAGGTTTATGAAGAACTACGGTAGAGTGGCCCAATTTGCACCAGCCTATGCTATGAATGATGAGTTTTCAAGAGTTCTTCACCAGCAAATGGAATTCTTTTCTAGCAATCCTAGTGCTGATACCCTCAATCGTGTCAGGGGTGAAATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGCGATCGAATTGAGCTTCTTGTTGATAAGACCGCGACAATGCAAGACAGTGCATTTCACTTTAGGAAACAATCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAATTTCAAACTCCTGGCGCTATTGACTTGCTTGATTGTTCTCTTACTTTACCTTATTATCGCTGCTTGTTGTGGAGGCATCACTCTACCATCATGCAGATCCTAG 654 0.4771 MAILYALVARGTVVLAEFSAVTGNTGAVARRILEKLPAEAESRLCFSQDRYIFHILRSDGLSYLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVAQFAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNFKLLALLTCLIVLLLYLIIAACCGGITLPSCRS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00207 217 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Aip03g00207 217 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Aip03g00207 217 Pfam Synaptobrevin 133 208 IPR042855 -
Aip03g00207 217 ProSitePatterns Synaptobrevin signature. 141 160 IPR001388 GO:0016021|GO:0016192
Aip03g00207 217 Gene3D Longin domain 1 124 - -
Aip03g00207 217 Gene3D - 125 206 - -
Aip03g00207 217 SMART Longin_2 28 110 IPR010908 -
Aip03g00207 217 CDD R-SNARE 125 181 - -
Aip03g00207 217 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 216 - -
Aip03g00207 217 SUPERFAMILY SNARE fusion complex 126 185 - -
Aip03g00207 217 CDD Longin 4 118 IPR010908 -
Aip03g00207 217 PRINTS Synaptobrevin signature 128 147 IPR001388 GO:0016021|GO:0016192
Aip03g00207 217 PRINTS Synaptobrevin signature 148 167 IPR001388 GO:0016021|GO:0016192
Aip03g00207 217 PRINTS Synaptobrevin signature 184 203 IPR001388 GO:0016021|GO:0016192
Aip03g00207 217 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 123 183 IPR042855 -
Aip03g00207 217 PANTHER SNARE PROTEINS 1 216 - -
Aip03g00207 217 SUPERFAMILY SNARE-like 3 118 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00207 Aip-Chr3 2102329 2106958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00207 1 217 Miscellaneous Gene Families AT5G22360 85.520 1.04e-141 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00207 K08515 - egr:104433963 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00207 03 2102329 2106958 Aip03g00207 03 2102329 2106958 ECH