Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00190 ATGAAACGTTTCTTCCAGGTTATCAACAAAGACTCCGATGGTTCATGCAAGAAGCCCAAAGAGGAAGGAAATTACGATAATGCCACTGACACTGACACTCAGAAGAAAAAGGAGCCATTGAAGTTCGTTACTTGGAACGCCAACAGCTTCTACCTCCGCGTCAAGAACAACTTCCCTGAGCTATGCAAATTCGTCACTTCCTTTGATCCTGACGTCATTGCAATTCAGGAAGTGCGGATGCCTGCTGCTGGATCTAAGGGCACACCCAAAAATCAGGGAGAACTTAAGGATGATACAACCGCGTCCAGGGAAGAGAAGGCGGCATTGATGCGTGCTCTTTCAGCTCCACCTTTTGGGAACTATCGTGTTTGGTGGTCTCTGGCAGATTCCAAGTATGCAGGGACAGCACTATTTGTGAAAAAATGCTTCAAACCAAAAAATGTCTTTTTCAATCTTGATAAAATAGCTTCAAAGCATGAACCAGATGGCAGAGTAATCTTGGTTGAATTCGAAACCCTTCGGTTGTTGAATACATATGTTCCAAATAATGGGTGGAAAGAGGAACCAAACTCATTTCAAAGGAGAAGAAAATGGGACAAAAGGATTCTAGAATTTGTTACACAAAATTCAGACAAGCCTTTGATATGGTGTGGGGATCTAAATGTGAGCCATGAAGAGATTGATGTGAGTCATCCAGAGTTTTTCAGTGCAGCGAAACAAAACGGCTATGTTCCTCCAAATAAAGAGGATTGCGGGCAGCCTGGCTTTACTTTATCTGAAAGAAGACGATTTGGTAACATCTTAAAAGAGGGACAGCTGGTAGATGCCTACAGATTTCTGCACAATGACAAGGACATGGAACGAGGTTTCTCATGGTCCGGAAACCCAATAGGAAAGTATCGTGGAAAACGGATGCGAATAGACTATTTCCTAGTTTCAGAAAAACTCAAAGACAGGATCGTTGCATGCGAAATGCATGGACATGGAATAGAGTTACAAGGCTTTTATGGAAGTGATCACTGCCCTGTTACACTGGAGCTCTCTCCAAGTTCCAACTCTCAAAATGAGAATCCAGAATGA 1080 0.4287 MKRFFQVINKDSDGSCKKPKEEGNYDNATDTDTQKKKEPLKFVTWNANSFYLRVKNNFPELCKFVTSFDPDVIAIQEVRMPAAGSKGTPKNQGELKDDTTASREEKAALMRALSAPPFGNYRVWWSLADSKYAGTALFVKKCFKPKNVFFNLDKIASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVTQNSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKQNGYVPPNKEDCGQPGFTLSERRRFGNILKEGQLVDAYRFLHNDKDMERGFSWSGNPIGKYRGKRMRIDYFLVSEKLKDRIVACEMHGHGIELQGFYGSDHCPVTLELSPSSNSQNENPE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00190 359 SUPERFAMILY DNase I-like 40 347 IPR036691 -
Aip03g00190 359 MobiDBLite consensus disorder prediction 12 33 - -
Aip03g00190 359 CDD Ape1-like_AP-endo 40 347 - -
Aip03g00190 359 TIGRFAM xth: exodeoxyribonuclease III (xth) 40 347 IPR004808 GO:0004518|GO:0006281
Aip03g00190 359 PANTHER AP ENDONUCLEASE 30 351 IPR004808 GO:0004518|GO:0006281
Aip03g00190 359 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 30 351 - -
Aip03g00190 359 ProSiteProfiles AP endonucleases family 1 profile. 40 349 IPR004808 GO:0004518|GO:0006281
Aip03g00190 359 Gene3D Endonuclease/exonuclease/phosphatase 6 349 IPR036691 -
Aip03g00190 359 Pfam Endonuclease/Exonuclease/phosphatase family 43 340 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00190 Aip-Chr3 1911590 1916065 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00190 - - gmx:100817167 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00190 03 1911590 1916065 Aip03g00190 03 1911590 1916065 ECH