Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00170 ATGGGTGGATCAAGTTCTAAAAGAAGTAGTTCCAGGCGTTCAACCACGAGGTCGAATTCAAATTCATGGTACCCTCAATATCAAACACCTTCTTATGCACAAAACCCTCAGTATCATGGGCCTCAGGGTTATCAATATCATGGCAACACATCTCAAAGCTATGGTGGCAGCGGGAGTGGCCGTCCCGCGGAGCAGAAGAAGAGGTTGGATAGGAAGTATTCGAGGATAGATGACAATTATCATAGCTTGGAGCAGGTAACCGATGCTCTGGCAGGTGCTGGCCTAGAATCTTCCAACCTCATTGTTGGTATTGATTTTACAAAGAGCAACGAGTGGACAGGTGGAAGATCATTTCAAAGGAGATGCTTGCATCACATTGGTCACGAGCAAAATCCATACGAACAAGCTATATCTATCATTGGGAAAACATTGTCTTCCTTCGATGAGGATAACCTGATTCCTTGTTTTGGGTTCGGTGATGCATCGACACATGACCAAGAAGTTTTTAGTTTCTACCCGGATGATAGATTTTGTCACGGATTTGAAGAAGTGTTGTCACGATATCGAGAATTAGTCCCTCAATTAAGGCTTGCAGGACCGACATCATTTGCCCCAATTATTGAGATGGCAGTCTCCATTGTTGAGCAAAGTGGAGGCCAGTACCATGTCTTATTGATCATAGCTGATGGACAGGTAACAAGAAGTGTTGATACCGAGCGTGGTCAATTGAGTGCACAAGAAAAGAACACGGTAGAAGCTATTGTGAAAGCAAGCGAATATCCCTTATCGATCATTCTGGTTGGAGTTGGCGACGGGCCGTGGGACATGATGAGACAATTTGATGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGTTTGTGAATTTTACGGAAATAATGTCAAAGAACATGGATCGATCACGTAAGGAAGCAGAGTTTGCACTTGCTGCTTTGATGGAAATACCCTCTCAGTACAAGGCAACACTAGAACTTAATATATTGGGTGCTCGCAGAGGGAAAGATATAGACAGGATTGCTCTACCACCGCCGCTATATGGTTCCAATACGCCATCTTATAACTCTCCGAAAGCTTCGCGACAAAACAGTTTCCGCCCCACTGCGCCATCTCACAGTCAAAGACACGATGATGTCTTTCCCGCACATCCTCCTGCGACTTCTGCATCTGATAATCAGCTTTGTCCCATTTGTCTTACTGATCCCAAGAACATGGCATTTGGTTGTGGGCATCAGACATGCTGTGAATGTGGACAAGAGCTTGAATTATGCCCCATATGCAGGAGTACTATTGACACAAGAATTAAACTTTATTAA 1335 0.4419 MGGSSSKRSSSRRSTTRSNSNSWYPQYQTPSYAQNPQYHGPQGYQYHGNTSQSYGGSGSGRPAEQKKRLDRKYSRIDDNYHSLEQVTDALAGAGLESSNLIVGIDFTKSNEWTGGRSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDDRFCHGFEEVLSRYRELVPQLRLAGPTSFAPIIEMAVSIVEQSGGQYHVLLIIADGQVTRSVDTERGQLSAQEKNTVEAIVKASEYPLSIILVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKEAEFALAALMEIPSQYKATLELNILGARRGKDIDRIALPPPLYGSNTPSYNSPKASRQNSFRPTAPSHSQRHDDVFPAHPPATSASDNQLCPICLTDPKNMAFGCGHQTCCECGQELELCPICRSTIDTRIKLY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00170 444 SMART VWA_4 97 300 IPR002035 -
Aip03g00170 444 MobiDBLite consensus disorder prediction 1 69 - -
Aip03g00170 444 ProSiteProfiles Zinc finger RING-type profile. 401 434 IPR001841 -
Aip03g00170 444 Pfam Copine 122 335 IPR010734 -
Aip03g00170 444 CDD RING-HC_RGLG_plant 400 444 IPR045317 GO:0061630|GO:0070534
Aip03g00170 444 SUPERFAMILY vWA-like 98 281 IPR036465 -
Aip03g00170 444 SUPERFAMILY RING/U-box 385 440 - -
Aip03g00170 444 PANTHER RING-FINGER PROTEIN 1 444 - -
Aip03g00170 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 444 IPR013083 -
Aip03g00170 444 Pfam Zinc finger, C3HC4 type (RING finger) 398 439 - -
Aip03g00170 444 PANTHER COPINE FAMILY PROTEIN 1 1 444 - -
Aip03g00170 444 MobiDBLite consensus disorder prediction 1 59 - -
Aip03g00170 444 MobiDBLite consensus disorder prediction 354 376 - -
Aip03g00170 444 MobiDBLite consensus disorder prediction 348 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00170 Aip-Chr3 1743204 1748598 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00170 K16280 - gmx:100809850 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00170 03 1743204 1748598 Aip03g00170 03 1743204 1748598 ECH