Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00143 ATGGATCCAAATCCAACTAACTTCCCAATCCTCTCTTACGTCATGTCTCGTCTCCCTTCTCTGACTCCCAAAACCGCCGCAGATTCCAATAACAACCTTGACGACCTCGAGCAGCCGCCTCCACTCTCCGATGCTGCTGCTGCTTCTTCTGTGGGCCCACTCGGCACACAATTATTGGGCCAGATGCCCAACCTTGACGACGCTAACCTCCTCGCCTCCATGGGCCGTGCAATCTCCGACGTCGCTCAGGCCCGATCGGTTCTCAATCTAATTGGCGACCGCCCTACTCACGAGGAAGTCGACGCCGCCAGGGCCGACCTTGCTGACCTGGAGGCCAGGCTGTCACGCCAGCTGGAGGAGATCGTTCTGGAGCCCAGGCCCGCTGACGTGGATATCCACACTTGGCGGGCCCGGCAGGCCGAGAGGGAGCTCAAGTGCAGGGAGGAAGCGGAGAAGGAGAGGCGTGTCGTCAAGTCGGTCATACAGCTCGATGAGATGCACGATGCGTACGAGAGGCTTCTTGCTGACGCCGAGAAGCGACTCGTTAGGATCTACGGCGGTGCCGGAGATGCCGCCGATGACGCCGGTGTTGCTGCTGCTGGTGATGAGCTGAACGAAGAGGTTGCGGAAATACTGCAGGAAGCTTACGGGAAAGGGATGGAGAGGGTGGATCTTTCTGGCCGGCGGTTGCGGTTGTTGCCGGAGGCGTTTGGGAGGATTTCCGGCCTTGTGGTGCTTGATGCATCCGCCAATCAGCTTTCGACAATTCCCGACTCGATAGCTGGATTGCAAAACCTGGAGGAGCTTAACCTATCTTCAAACCTTTTGACATCACTTCCAGATTCAATCGGATTATTGCAAAAACTGAAATTTCTCAATATCTCTGGAAATAAACTGAGTGCCCTTCCTGATCCCATCTGTCAATGCAGGTCATTGGTGGAGCTGGATGTGAGCTTTAACAGTCTGACATATTTGCCAACGAACATTGGATATGAATTGCCAAACTTAAAGAAACTCATGATTCAACTGAACAAGATTCGATCTCTACCCTCATCTATCTGTGAGTTGAAGTCGCTGCGCTATCTGGATGCTCACTTTAATGAGCTACATGGACTTCCCATTGCAATCGGGAGACTCACCAATCTGGAAGTTCTCAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTACCCGAGACATTTGGTGATTTGACTAACCTCAAAGAATTAGATCTCAGCAACAATCAGATTCATGCACTTCCTGATACATTTGGTCGCCTTGAAAATTTGACGAAGCTTAACTTGGATCAGAATCCTATTGAATTACCACCAATGGAGATTGTAAATCAAGGCGTCGAGGCTGTGAAAACCTTTATGGCGAAGAGATGGATTGATATATTGCTAGAGGAAGAAAGGAAAAGCAACCAAGAAATGCAAGAGCAAGCACAGAATGGATGGTTAACACGAAGCACATCGTGGTTGAAGAATGTTTCCGGGAATGTAATTGGGTATCTTGGAACAGTTGGATCACCCATGGCACCCAAATTACCCAGAGATGCTTATCTTGATCAGCAGCTATGA 1581 0.5028 MDPNPTNFPILSYVMSRLPSLTPKTAADSNNNLDDLEQPPPLSDAAAASSVGPLGTQLLGQMPNLDDANLLASMGRAISDVAQARSVLNLIGDRPTHEEVDAARADLADLEARLSRQLEEIVLEPRPADVDIHTWRARQAERELKCREEAEKERRVVKSVIQLDEMHDAYERLLADAEKRLVRIYGGAGDAADDAGVAAAGDELNEEVAEILQEAYGKGMERVDLSGRRLRLLPEAFGRISGLVVLDASANQLSTIPDSIAGLQNLEELNLSSNLLTSLPDSIGLLQKLKFLNISGNKLSALPDPICQCRSLVELDVSFNSLTYLPTNIGYELPNLKKLMIQLNKIRSLPSSICELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTNLKELDLSNNQIHALPDTFGRLENLTKLNLDQNPIELPPMEIVNQGVEAVKTFMAKRWIDILLEEERKSNQEMQEQAQNGWLTRSTSWLKNVSGNVIGYLGTVGSPMAPKLPRDAYLDQQL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00143 526 MobiDBLite consensus disorder prediction 22 37 - -
Aip03g00143 526 Gene3D Ribonuclease Inhibitor 197 345 IPR032675 -
Aip03g00143 526 MobiDBLite consensus disorder prediction 22 49 - -
Aip03g00143 526 PRINTS Leucine-rich repeat signature 266 279 - -
Aip03g00143 526 PRINTS Leucine-rich repeat signature 404 417 - -
Aip03g00143 526 SUPERFAMILY L domain-like 219 445 - -
Aip03g00143 526 SMART LRR_bac_2 404 423 - -
Aip03g00143 526 SMART LRR_bac_2 263 282 - -
Aip03g00143 526 SMART LRR_bac_2 309 328 - -
Aip03g00143 526 SMART LRR_bac_2 356 375 - -
Aip03g00143 526 SMART LRR_bac_2 286 305 - -
Aip03g00143 526 SMART LRR_bac_2 333 352 - -
Aip03g00143 526 SMART LRR_bac_2 379 400 - -
Aip03g00143 526 SMART LRR_bac_2 240 259 - -
Aip03g00143 526 Coils Coil 160 180 - -
Aip03g00143 526 Coils Coil 100 120 - -
Aip03g00143 526 Gene3D Ribonuclease Inhibitor 346 460 IPR032675 -
Aip03g00143 526 ProSiteProfiles Leucine-rich repeat profile. 406 427 IPR001611 GO:0005515
Aip03g00143 526 Coils Coil 464 484 - -
Aip03g00143 526 Pfam Leucine rich repeat 310 369 IPR001611 GO:0005515
Aip03g00143 526 Pfam Leucine rich repeat 381 440 IPR001611 GO:0005515
Aip03g00143 526 Pfam Leucine rich repeat 242 299 IPR001611 GO:0005515
Aip03g00143 526 ProSiteProfiles Leucine-rich repeat profile. 288 309 IPR001611 GO:0005515
Aip03g00143 526 ProSiteProfiles Leucine-rich repeat profile. 265 286 IPR001611 GO:0005515
Aip03g00143 526 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 509 - -
Aip03g00143 526 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 3 509 - -
Aip03g00143 526 SMART LRR_typ_2 333 356 IPR003591 -
Aip03g00143 526 SMART LRR_typ_2 310 332 IPR003591 -
Aip03g00143 526 SMART LRR_typ_2 379 403 IPR003591 -
Aip03g00143 526 SMART LRR_typ_2 427 450 IPR003591 -
Aip03g00143 526 SMART LRR_typ_2 286 309 IPR003591 -
Aip03g00143 526 SMART LRR_typ_2 263 285 IPR003591 -
Aip03g00143 526 SMART LRR_typ_2 404 426 IPR003591 -
Aip03g00143 526 SMART LRR_typ_2 240 262 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00143 Aip-Chr3 1417308 1420154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00143 251 443 Receptor kinase-like Gene Family AT5G25910 33.014 1.12e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00143 - - gmx:100803823 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00143 03 1417308 1420154 Aip03g00143 03 1417308 1420154 ECH