Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00142 ATGGGTGAAACTAAAAAGTTGCTGAAGGTTATTGCTAACCGTTTAGATAGGATCTTCAACAAGAAAGATGGAAGTTCATCAAAAGCTGAGGATTCTCCCGAAACATCCACTATTTTATCTGATTCTGAAGATTTTGTAGAAGGTTTATCTTCTCCTTGTAGCTTTGAAGAGGCAATTGCACTAATGGAATCCGGAGATAACAAACAGGAGATGCCAGATAACTTGCCGGGCGGTGTTCTGGTGGATCAGGTTTATGTAGTATCTCCATATGATCTCAATGCATTTCTTTTCGCACCGAATTCACAGTTTAGGAAAGATTTGGCAGAACTGCAGGGGACAACAAATATGCAAGAAGGGCCTTGGACATGGAAACATGGGGACACATCTTGTTTAATGCGAGTTGTTTCGTATACAAAAGCAGCTTCGAAGCTAGTTAAGGCTGTTAATGCCACTGAAGAGCAAAGCTATGTTAGAGTGAGTAAGGATGAATTTGCAGTACTTGTTAGTGTAAGCACACCTGAGGTTCCATATGGGAGCACATTTCGGGTTGAATTGCTTTACAAGATAATGCCGGGTGGCGAATTATCTTCTGGAGAGAAATCGTCACATCTTGTGATATCATGGGGCATGATGTTCCTGCAGAGCACAATGATGAAAGGAATGATAGAAGGGGGAACTAGACAAGGATTGAAGGAGAGTTTTGATCAGTTCTCCGACCTACTCGCTCGAAATTTCAAGGTGCTAGATTTGGCAGACTTATCAGACAAGGAACATGTGTTGGCAACTTTGCAGACAGAGGACCCTTGGAATTGGTGGATGGCAATCAAATACTTTTTGAATTTCACGGTAGTTTCCACTTTGTTTATGTTGTTATATGTTTTGCTGCATATTTCGCGGTGCAGTCCGAGGGAACCTCGCGGCTTGGAATTCAAGGGACTTGAATTGCCAGATAGCTTTGGAGAGCTTGTTACAAGTGCAATTTTGATCATTCAGTTGCATCGCGTTTACAATATGGTTGTTCACTTTGTGCAGGCTAGATTTCAGATGGGAACTGATCATGGCCTAAAAGCCAATGGGGATGGTTGGGTTGTTACAGTGGCTTTAATTGAGGCGGTCGACTTGGCATCCTTGGAGTCCACAGGGTTGTCGGACCCCTATGTAATTTTAACCTGCAATGGACAAACAAGGTCAAGCTCAGTGAAGCTTCAAACATCTGATCCTCAATGGAATGAGATATTAGAGTTTGATGCTATGGAAGAACCACCATCGGTTTTAGATGTGGAAGTTTTCGATTTTGATGGTCCATTTGACCAGGATGTTTCGCTAGGACATGCCGAGATCAATTTTCTAAAGCACACATCGACAGAATTGGCCGACATGTGGATTGTGCTTGAAGGAAAGCTCGCTAAGTCCGCACAATCGAAGTTGCATCTGAGGATTTTCTTGGACAATAATAAAGGAGTCGAAACGATTAAGGAATATTTGGAGAAAATGGAAAAGGAAGTAGGAAGAAAGTTGAATCTTCAATCGCCTCAACGAAATTCTACATTCCAGAAACTGTTTGGTTTGCCTCCAGAAGAATTTCTAATCAAAGAATTCACATGTTACCTGAAGAGAAAAATGCCTTTACAGGGAAGGATGTTTCTTTCAGCTAGGATTCTTGGGTTTTATGCCAATCTTTTTGGACATAAAACCAAATTTTTCTTCCTTTGGGAAGACATAGAGGACATACAAGTTCATCCTCCAACATGGGCATCAGTAGGAAGCCCTATACTGGTCATAATTCTGCGGAAAGGTCGAGGAATCGATGCAAGGCATGGCGCAAAGTCTATAGACGAAGAAGGAAGGCTTAGGTTCCATTTTCAGTCATTTGCATCGTTCGGTGTGGCCTCCAGAACGATTCGAGCCTTGTGGAGAGCAAGAACACTGCCCTACCAGAAAGAACAAGTTATGGAAGAGCATGAAGAACAAGAAGAACGCTTTGTAATTCCTGAAGACTCTGAATATGTCATGGACAATGAAGGAAAAGGATCCAAGATATATTCTGCAGAATTTCCAATCAAGATGAGATCAATGATGGGAATTTTTGATGGAGGAAGCTTGGAACATAGAATTATGCAGAGAGCAGGTTGTATGAACTATGAAACTACTTCGTGGGAGCCGATAAAGCCGGACGTCTTTGAAAGGCGCGTTTCGTACAGATTCAATCGTCAAATGTCGGTTTTCGGCGGCGATGTCACATGCACACAACAGAAGTTTCCAAATGCAGACACTGGAGGTTGGATTGTGAATGAGGTTATGACTCTTCATGGTGTCCCATTTGCTGATCACTTCCATATAAATTTTAGGTACGAAATTGAGAAATGTGGTATTGATGAAAGTGGTTGCAAGTGTGATATATACATTGGAATTGTGTGGCTCAAGAGCTCTGATTTTCAGCAAAGGATAGATAGGAACATATCAACCAAGTTTACCATTAGAATGAAGGAAATATTTGAACAGGTTCAGAAAGAGATCTTGTTAATGTCTCAGAATTTTAATGGACATTAG 2550 0.4149 MGETKKLLKVIANRLDRIFNKKDGSSSKAEDSPETSTILSDSEDFVEGLSSPCSFEEAIALMESGDNKQEMPDNLPGGVLVDQVYVVSPYDLNAFLFAPNSQFRKDLAELQGTTNMQEGPWTWKHGDTSCLMRVVSYTKAASKLVKAVNATEEQSYVRVSKDEFAVLVSVSTPEVPYGSTFRVELLYKIMPGGELSSGEKSSHLVISWGMMFLQSTMMKGMIEGGTRQGLKESFDQFSDLLARNFKVLDLADLSDKEHVLATLQTEDPWNWWMAIKYFLNFTVVSTLFMLLYVLLHISRCSPREPRGLEFKGLELPDSFGELVTSAILIIQLHRVYNMVVHFVQARFQMGTDHGLKANGDGWVVTVALIEAVDLASLESTGLSDPYVILTCNGQTRSSSVKLQTSDPQWNEILEFDAMEEPPSVLDVEVFDFDGPFDQDVSLGHAEINFLKHTSTELADMWIVLEGKLAKSAQSKLHLRIFLDNNKGVETIKEYLEKMEKEVGRKLNLQSPQRNSTFQKLFGLPPEEFLIKEFTCYLKRKMPLQGRMFLSARILGFYANLFGHKTKFFFLWEDIEDIQVHPPTWASVGSPILVIILRKGRGIDARHGAKSIDEEGRLRFHFQSFASFGVASRTIRALWRARTLPYQKEQVMEEHEEQEERFVIPEDSEYVMDNEGKGSKIYSAEFPIKMRSMMGIFDGGSLEHRIMQRAGCMNYETTSWEPIKPDVFERRVSYRFNRQMSVFGGDVTCTQQKFPNADTGGWIVNEVMTLHGVPFADHFHINFRYEIEKCGIDESGCKCDIYIGIVWLKSSDFQQRIDRNISTKFTIRMKEIFEQVQKEILLMSQNFNGH 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00142 849 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 3 845 - -
Aip03g00142 849 ProSiteProfiles C2 domain profile. 343 462 IPR000008 -
Aip03g00142 849 Pfam GRAM domain 516 598 IPR004182 -
Aip03g00142 849 CDD C2 364 464 - -
Aip03g00142 849 Pfam C2 domain 363 462 IPR000008 -
Aip03g00142 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 362 486 IPR035892 -
Aip03g00142 849 Gene3D C2 domain 343 482 IPR035892 -
Aip03g00142 849 SMART gram2001c 515 581 IPR004182 -
Aip03g00142 849 SMART C2_3c 363 462 IPR000008 -
Aip03g00142 849 Pfam VAD1 Analog of StAR-related lipid transfer domain 80 229 IPR031968 -
Aip03g00142 849 Pfam VAD1 Analog of StAR-related lipid transfer domain 680 820 IPR031968 -
Aip03g00142 849 PANTHER BNAA05G37250D PROTEIN 3 845 IPR044511 -
Aip03g00142 849 Gene3D - 513 640 IPR011993 -
Aip03g00142 849 MobiDBLite consensus disorder prediction 22 41 - -
Aip03g00142 849 ProSiteProfiles VASt domain profile. 676 839 IPR031968 -
Aip03g00142 849 ProSiteProfiles VASt domain profile. 76 249 IPR031968 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00142 Aip-Chr3 1409992 1415731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00142 364 486 Lipid Metabolism Gene Families AT5G17980 28.571 4.33e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00142 - - gmx:100811103 1357.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00142 03 1409992 1415731 Aip03g00142 03 1409992 1415731 ECH