Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00026 ATGGGAAACACCAAATTACCTTATTTTATGCTAAGCCTCTTAATATTATTAGTGTCTTTCTTGCATGGTGCAAAAGCAGAACAATGTGGTAAACAAGCAAATGGAGCATTATGCCCAAACAGTTTATGTTGTAGCCAATTTGGTTGGTGTGGTACCACAGACCCTTATTGTTTAGTTGGTTGCCAAAGCCAATGCAAAGGTTCAACACCAACACCTTCAACTCCGACACCAACACCTAGCGGTGGTGGCAGCGGCGGCGATGTTGCAAACATAATTACTTCTTACGTGTTTGATCAAATGCTTAAGTACCGGAATGATCCAAGGTGTAAGGGGAATGGATTCTACTCCTATGATGCCTTCATTGCCGCCGCTCGCTCTTTCGGTGGTTTTGGCACCACCGGTGATGATGCCACCCGCAAGAGGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGGAGGGTGGTCAAGTGCACCTGATGGACCATATGCGTGGGGTTATTGCTTTCTCAGTGAAATTGGCGCCACAGCAGATTATTGTGTTGCCTCCCAACAGTGGCCTTGCTCTCCTGGTAAAAAATATTATGGCAGAGGACCAATCCAAATCTCTTACAATTACAACTATGGTCCAGCCGGTAAAACTATAGGAATTGATCTATTGAACAATCCTGATCTTGTAACTACAAATCCAACTGTGTCATTCAAAACAGCCATATGGTTTTGGATGACACCACAAGGAAATAAGCCATCAAGTCACGATGTCATCACCGGAAGGTGGACGCCGTCTAATGCTGACAGGTCGGCCGGCCGAGTCCCCGGCTATGGCGTGATCACTAACATTATCAATGGTGGAATTGAATGTGGACACGGGTCGGATTCTCGTGTCCAAGATCGGATCGGTTTCTATCAAAGGTATTGCCAAATGTTGGGAGTGAGCCCTGGAGACAACTTGGATTGTGGCAACCAAAAGTCATTTGCTTAG 990 0.4576 MGNTKLPYFMLSLLILLVSFLHGAKAEQCGKQANGALCPNSLCCSQFGWCGTTDPYCLVGCQSQCKGSTPTPSTPTPTPSGGGSGGDVANIITSYVFDQMLKYRNDPRCKGNGFYSYDAFIAAARSFGGFGTTGDDATRKREIAAFLAQTSHETTGGWSSAPDGPYAWGYCFLSEIGATADYCVASQQWPCSPGKKYYGRGPIQISYNYNYGPAGKTIGIDLLNNPDLVTTNPTVSFKTAIWFWMTPQGNKPSSHDVITGRWTPSNADRSAGRVPGYGVITNIINGGIECGHGSDSRVQDRIGFYQRYCQMLGVSPGDNLDCGNQKSFA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00026 329 ProSitePatterns Chitinases family 19 signature 1. 109 131 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aip03g00026 329 PANTHER CHITINASE-RELATED 13 329 - -
Aip03g00026 329 PRINTS Chitin-binding domain signature 36 44 IPR001002 GO:0008061
Aip03g00026 329 PRINTS Chitin-binding domain signature 44 51 IPR001002 GO:0008061
Aip03g00026 329 PRINTS Chitin-binding domain signature 177 184 IPR001002 GO:0008061
Aip03g00026 329 SMART ChitinBD_3 28 65 IPR001002 GO:0008061
Aip03g00026 329 PANTHER CHITINASE (CLASS IB) / HEVEIN 13 329 - -
Aip03g00026 329 SUPERFAMILY Lysozyme-like 87 328 IPR023346 -
Aip03g00026 329 Gene3D - 26 68 IPR036861 GO:0008061
Aip03g00026 329 Pfam Chitinase class I 91 322 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aip03g00026 329 CDD chitinase_GH19 92 322 - -
Aip03g00026 329 ProSitePatterns Chitinases family 19 signature 2. 235 245 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aip03g00026 329 CDD ChtBD1_GH19_hevein 27 66 - -
Aip03g00026 329 Gene3D - 96 328 - -
Aip03g00026 329 PIRSF Endochitinase 2 329 IPR016283 GO:0004568|GO:0005975
Aip03g00026 329 ProSitePatterns Chitin recognition or binding domain signature. 38 57 IPR018371 GO:0008061
Aip03g00026 329 ProSiteProfiles Chitin-binding type-1 domain profile. 26 67 IPR001002 GO:0008061
Aip03g00026 329 SUPERFAMILY Plant lectins/antimicrobial peptides 28 75 IPR036861 GO:0008061
Aip03g00026 329 Pfam Chitin recognition protein 28 65 IPR001002 GO:0008061
Aip03g00026 329 Gene3D Endochitinase, domain 2 174 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00026 Aip-Chr3 289432 291965 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00026 26 328 Glycoside Hydrolase AT3G12500 64.474 1.01e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00026 K20547 - gmx:547572 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00026 03 289432 291965 Aip03g00026 03 289432 291965 ECH