Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02684 ATGTTACACTCCCAGGTTTCCTTCAAGATCCTGCAACGGTTGCCATTACAATCATTATTCAAACATGGGTCGAAGTTTTTACGCTCACTCAAACATGAACACCAGGTGTTCGATCATATTCCTCACCCAAAAGTTGCATCGATTAAGCGTTCCATGCTTACCCTTTTGCACAACAACCTTCCCTTTCGTGCCCTGTTTGTATTCAAGACCCAGTTCCAGCTGTGTTCGCTCGACTGTGTTGATGAGGTCGGTGTTGCCTTGGCTCTCAAGGCTTGTCAAGGAGAGCTGAAACTTGGGTGCCAACTCCATGGTTTTGCAGTGTCCAGCGGGTTCATTTCATTGGTCACCGTGTCAAATTCGCTGATGAAGATGTACTGCAAGTCAGGGAATTTTCGGAAGGCCTTGCGTGTGTTTGAGAATTTGAGTTGCCCTGACATTGTTTCTTGGAACACTGTGCTTTCAGGGTTTGAGGAGAACATAGATGCTTTGAGTTTTGCTTGTTCTATGCATTCAAATGGGATCGTGTTTGATCCTGTGACATACACCACTGCTCTTGCCTTTTGTTGGGGTGATCATGGGTTTTGTTTTGGGAGCCAATTGCATTCTCTTGTTGCAAAATTTGGATTTAATTGTGAAGTTTTCGTAGGGAATGCTCTGATAACCATGTATTCAAGGTCAGGGAGTTTAGCTGAGGCTAGGAGGGTGTTTGATGAGATGCCCCGGAAGGATTTGGTTTCATGGAGTGCAATGCTTTCGGGTTATGCTCAAGAGGGGGAATGTTATGGGCTGGAAGCAGTTTCACTGTTTGTTAGCATGGTTAGGCAAGGGATGTCCCTTGACCATGTCTCGTTTACAGGTGCAGTTTCAGCTTGTGGTTATATGAAAAACTTAGAGCTAGGGAGGCAGATACATGGTTTGACACTTAAAGTGGGGTATGGAACACATGTTTCGGTTTGCAATGTGTTGATCTCGACTTATTTGAAGTGTGAGGTCGGCAGAGATGCAAAACTAGTTTTTCAGCTGATGAATAATCGCAATGTAGTCTCTTGGACGACAATGATTTCAATTGAAGAAGAAGATGCAGTGTCTCTTTTCAATGAGATGAGAAAAGATGGTGTATATCCAAATGATATTACATTTATAGGACTATTGCATTCTATTACACTCAATAATCTGGTGGTGGAAGGTGAAATGATTCATGGATTATGCATCAAAAGCAGCTTCTTGTCGGAACCAAATGTCTCCAATAGCCTTATTACCATGTATGCCAAGTTTGAATCTGTTCAAGAATCGAAGAAAATTTTTGAGGAGGTTAACCATAGAGAGATAATAGCATGGAATTCATTAATTTCAGGGTATGCTCAGAATAGCTTATTCAAAGATGCTTTCCTTACATTTTTGGCTGCAGTGAATGAGGTAAAACCAAACCAATACACTTTTGGCAGTGTCTTAAATGCTATTGCTGCTGCTGAGGATATATCTTTGAAACATGGGCAACGATGCCATTCGGAATTGATCAAACGTGGGTTAGACACTGATCCGATTGTTTCAGGTTCTCTGCTTGACATGTATGGCAAGCGTGGGAGCATAGCCGAGTCTCAAAGAGTATTTGACGAGACACCTAGAAAAAGTGAGTTTGCTTGGACTGCAATAGTATCAGCCTATGCTCGACATGGGGACTATGAGTCAGTGATGAGTTTGTTTAAGGAGATGGAGAGTGAAGGAACCACTCCTGACTCCATCACTTTCCTTTCCATTTTAGCTGCATGTTGTAGAAAAGGCATGGTTGATGTAGGCCATAGAGTCTTTGACTCCATGGTGAAAGAACATTCAATTGAACCAACTCCAGAACATTATTCTATCATGGTGGACATGTTAGGCCGCGCAGGACTGCTAAATGAGGCAGAAGAGTTGATGCACCAGATTCCAGGAGGACCTAGATTGTCAGTGTTGCAAAGCTTGCTTGGTTCTTGTAGAATACATGGGAATATAGAGATGGCTGAGAGGGTTATTGATAGGTTGGTTGAAATGGATCCTGCGAGTTCAGGTTCATATGTATTAATGGCAAACTTATACGCTGAGAAAGGGAAATGGGAGAAAGTAGCTGAAGTGAGGAAACTTATGAGAGAGAGGGGAGTGAAGAAGGAAGTTGGGTTTAGTTGGGTGGACGTTGGTGGTATTAATTCCTTGTATTTGCATGGTTTCTCTTCCGGGGATAAGTCGCACCCGGAGTCTGAGGATATTTGTAACATGGCAGAGTTTATTGGATTGCAAATGAAAGTTTTGAAAGGGAGCAAAGCAAGGGAAGGAGACTGGCATCAGGAATAA 2328 0.427 MLHSQVSFKILQRLPLQSLFKHGSKFLRSLKHEHQVFDHIPHPKVASIKRSMLTLLHNNLPFRALFVFKTQFQLCSLDCVDEVGVALALKACQGELKLGCQLHGFAVSSGFISLVTVSNSLMKMYCKSGNFRKALRVFENLSCPDIVSWNTVLSGFEENIDALSFACSMHSNGIVFDPVTYTTALAFCWGDHGFCFGSQLHSLVAKFGFNCEVFVGNALITMYSRSGSLAEARRVFDEMPRKDLVSWSAMLSGYAQEGECYGLEAVSLFVSMVRQGMSLDHVSFTGAVSACGYMKNLELGRQIHGLTLKVGYGTHVSVCNVLISTYLKCEVGRDAKLVFQLMNNRNVVSWTTMISIEEEDAVSLFNEMRKDGVYPNDITFIGLLHSITLNNLVVEGEMIHGLCIKSSFLSEPNVSNSLITMYAKFESVQESKKIFEEVNHREIIAWNSLISGYAQNSLFKDAFLTFLAAVNEVKPNQYTFGSVLNAIAAAEDISLKHGQRCHSELIKRGLDTDPIVSGSLLDMYGKRGSIAESQRVFDETPRKSEFAWTAIVSAYARHGDYESVMSLFKEMESEGTTPDSITFLSILAACCRKGMVDVGHRVFDSMVKEHSIEPTPEHYSIMVDMLGRAGLLNEAEELMHQIPGGPRLSVLQSLLGSCRIHGNIEMAERVIDRLVEMDPASSGSYVLMANLYAEKGKWEKVAEVRKLMRERGVKKEVGFSWVDVGGINSLYLHGFSSGDKSHPESEDICNMAEFIGLQMKVLKGSKAREGDWHQE 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02684 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 242 IPR002885 -
Aip02g02684 775 Gene3D Tetratricopeptide repeat domain 297 404 IPR011990 GO:0005515
Aip02g02684 775 Pfam PPR repeat 119 139 IPR002885 -
Aip02g02684 775 Pfam PPR repeat 245 276 IPR002885 -
Aip02g02684 775 Pfam PPR repeat 349 373 IPR002885 -
Aip02g02684 775 Pfam PPR repeat 416 438 IPR002885 -
Aip02g02684 775 Pfam PPR repeat 445 466 IPR002885 -
Aip02g02684 775 Pfam PPR repeat 217 243 IPR002885 -
Aip02g02684 775 Pfam PPR repeat 618 641 IPR002885 -
Aip02g02684 775 TIGRFAM PPR: pentatricopeptide repeat domain 547 579 IPR002885 -
Aip02g02684 775 TIGRFAM PPR: pentatricopeptide repeat domain 217 244 IPR002885 -
Aip02g02684 775 TIGRFAM PPR: pentatricopeptide repeat domain 119 140 IPR002885 -
Aip02g02684 775 TIGRFAM PPR: pentatricopeptide repeat domain 581 615 IPR002885 -
Aip02g02684 775 Gene3D Tetratricopeptide repeat domain 405 503 IPR011990 GO:0005515
Aip02g02684 775 Gene3D Tetratricopeptide repeat domain 198 296 IPR011990 GO:0005515
Aip02g02684 775 SUPERFAMILY TPR-like 504 681 IPR011990 GO:0005515
Aip02g02684 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Aip02g02684 775 Pfam E motif 661 723 IPR046848 -
Aip02g02684 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Aip02g02684 775 Gene3D Tetratricopeptide repeat domain 518 725 IPR011990 GO:0005515
Aip02g02684 775 Gene3D Tetratricopeptide repeat domain 78 191 IPR011990 GO:0005515
Aip02g02684 775 PANTHER OS07G0670000 PROTEIN 557 766 - -
Aip02g02684 775 PANTHER OS07G0670000 PROTEIN 472 568 - -
Aip02g02684 775 PANTHER OS07G0670000 PROTEIN 27 470 - -
Aip02g02684 775 PANTHER OS07G0578800 PROTEIN-RELATED 472 568 IPR045215 GO:0003723|GO:0009451
Aip02g02684 775 PANTHER OS07G0578800 PROTEIN-RELATED 557 766 IPR045215 GO:0003723|GO:0009451
Aip02g02684 775 PANTHER OS07G0578800 PROTEIN-RELATED 27 470 IPR045215 GO:0003723|GO:0009451
Aip02g02684 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 279 IPR002885 -
Aip02g02684 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 614 IPR002885 -
Aip02g02684 775 Pfam PPR repeat family 544 592 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02684 Aip-Chr2 102341761 102344224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02684 80 748 Glycoside Hydrolase AT3G49170 31.792 7.53e-114 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02684 - - cam:101513383 1176.39