Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02670 ATGTTGCAACCTTTCACACCCTTCTTTTCCTTTCTTCATAGAAAATCCAAATCACTCTTCAACCTCCCAAAACCAGCACCGAGTAGTAGTTGCTGTTCATGCTGGTGCTGGAGAAGACAGCGACCCAGAAGAAAATTCTCACCAAGTTTTGATTTTGATGAATTCTCAGCGTCTTTCCTAGACATGAATCTGTCAAGGCAGTTCCAACAAGTGTTCAAGCTCATTGATTCCAATGGTGATGGAAAAATCTCAACCACTGAGCTCAGTGAAACTCTTCTATGTCTTGGATACAACAAGTGCATGGCTAAAAAAGAAGCTGAGAGAATGGTGAGAGCTTTGGACTTTAATGGAGATGGGTTTGTTGACTTTGATGAATTCATGGTTGTGATGAGAGAAGGAATAGCAACAACAGAAGAAGAAGAAGAAGAAGAAGGTGGCAAGAACAATAACAATAATAGTATTGATCAAGATGAGTATCTTATGGATGCTTTTCATGTGTTTGATTCTGATAAGAATGGATTAATCTCTGCTAAGGAATTGAGGAGAGTTTTGGTTAATCTTGGGTGTGATCGTTGCAGCATCAGAGAGTGTAAGCGTATGATCAAAAGTGTTGACAAGAATGGTGATGGGTTTGTTGATTTTGATGAATTTAGATCCATGATGAAAAAGGGACTTTCCAAATCCAAACAAAATTAG 696 0.3865 MLQPFTPFFSFLHRKSKSLFNLPKPAPSSSCCSCWCWRRQRPRRKFSPSFDFDEFSASFLDMNLSRQFQQVFKLIDSNGDGKISTTELSETLLCLGYNKCMAKKEAERMVRALDFNGDGFVDFDEFMVVMREGIATTEEEEEEEGGKNNNNNSIDQDEYLMDAFHVFDSDKNGLISAKELRRVLVNLGCDRCSIRECKRMIKSVDKNGDGFVDFDEFRSMMKKGLSKSKQN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02670 231 ProSiteProfiles EF-hand calcium-binding domain profile. 155 190 IPR002048 GO:0005509
Aip02g02670 231 CDD EFh 67 131 IPR002048 GO:0005509
Aip02g02670 231 Gene3D - 152 231 - -
Aip02g02670 231 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Aip02g02670 231 SMART efh_1 159 187 IPR002048 GO:0005509
Aip02g02670 231 SMART efh_1 105 133 IPR002048 GO:0005509
Aip02g02670 231 SMART efh_1 67 95 IPR002048 GO:0005509
Aip02g02670 231 SMART efh_1 196 224 IPR002048 GO:0005509
Aip02g02670 231 ProSitePatterns EF-hand calcium-binding domain. 205 217 IPR018247 -
Aip02g02670 231 ProSitePatterns EF-hand calcium-binding domain. 114 126 IPR018247 -
Aip02g02670 231 ProSiteProfiles EF-hand calcium-binding domain profile. 192 227 IPR002048 GO:0005509
Aip02g02670 231 ProSitePatterns EF-hand calcium-binding domain. 168 180 IPR018247 -
Aip02g02670 231 PANTHER CALCIUM BINDING PROTEIN 57 227 - -
Aip02g02670 231 SUPERFAMILY EF-hand 58 223 IPR011992 -
Aip02g02670 231 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Aip02g02670 231 CDD EFh 159 222 IPR002048 GO:0005509
Aip02g02670 231 ProSitePatterns S-100/ICaBP type calcium binding protein signature. 109 130 IPR001751 -
Aip02g02670 231 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 57 227 - -
Aip02g02670 231 Gene3D - 10 151 - -
Aip02g02670 231 Pfam EF-hand domain pair 158 222 IPR002048 GO:0005509
Aip02g02670 231 Pfam EF-hand domain pair 67 131 IPR002048 GO:0005509
Aip02g02670 231 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02670 Aip-Chr2 102155329 102156180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02670 160 228 EF-hand Containing Proteins AT1G24620 33.333 9.03e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02670 - - aip:107628548 434.876