Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00608 ATGTTGCATAGACGCACATTCTCGTTCTTCTTCTTCATTACGACTACTCTTGTCCTCATGACATTCACATCATCATATTCACATGCGCATTCCATTGCCATCTCATCAAGATCAATGGCAGACATGGAAAGGTTCAGCAATGCTGGGAGAGGCAGCAACATCACCGGAATATCAGAGTTCAAGAGATATCTATGGCGTTTTGGGTACCTCAACCATAATATTAATACCACATGTACTTGTTTCAGCGACGAGTTTGACGCCATGTTAGAATCTGCTCTCGTTAGATACCAACGCAAGCTTGGACTCCAAGTCACTGGCAAGCTCGATTCCATCACCATTTCTCAGATGATCACACCGAGATGCGGAGTTCCAGACAGTAATGATCACACTCACACTCACATGCACTCCACAAAGAACTTTGTGTATTTTCCGGGGAAGCCACGGTGGTCGGGTCCAATGCCGACGACACTCACCTACGCTTTCTCCCCGGAATACACCATCCACACCTTGACCCTTCGCCAGATCCGGAGAGCCTTCCGACGCGCCTTCACGCGCTGGTCTAACGTCATTCCTCTCACATTTGTGGAATCAGACGACTACGGTTTTGCTGAGATCAAGATAGGGTTTTACAGCGGCGACCACGGCGATGGCGAGGCTTTCGACGGGGTTCTTGGAGTGCTGGCGCATTCATTCTCGCCGGAGAGCGGGCGGCTACACCTGGATGCGGCTGAGACGTGGGCGGTGGACTTCGGGGAGAGTTGGTCGGAGGTAGCGGTGGATTTGGAGTCCGTGGCAACGCACGAGATTGGACACGTGCTTGGTCTGTCACACAGTTCGGTTAGAGAGGCAGTTATGTATCCCAGCTTGAGGCCGAGAGAGAAGAGATATCGTCTCCACATTGATGACGTCATGGGAGTCCAATCTCTTTATGGCTCCAACCCTCATTTCAGATCATCTGATGTCTCGTCGCTTCAATCTGCTATCTCCGCAAATCAAGCTCCTCCTCGCTTTCCACCATTCAATATTCTTCTCTCTTGTGCATACCTTTTCTCTTTCTTTATAATTTTTTGCAGATGA 1077 0.4968 MLHRRTFSFFFFITTTLVLMTFTSSYSHAHSIAISSRSMADMERFSNAGRGSNITGISEFKRYLWRFGYLNHNINTTCTCFSDEFDAMLESALVRYQRKLGLQVTGKLDSITISQMITPRCGVPDSNDHTHTHMHSTKNFVYFPGKPRWSGPMPTTLTYAFSPEYTIHTLTLRQIRRAFRRAFTRWSNVIPLTFVESDDYGFAEIKIGFYSGDHGDGEAFDGVLGVLAHSFSPESGRLHLDAAETWAVDFGESWSEVAVDLESVATHEIGHVLGLSHSSVREAVMYPSLRPREKRYRLHIDDVMGVQSLYGSNPHFRSSDVSSLQSAISANQAPPRFPPFNILLSCAYLFSFFIIFCR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00608 358 ProSitePatterns Matrixins cysteine switch. 119 126 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Aip02g00608 358 PRINTS Matrixin signature 116 129 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip02g00608 358 PRINTS Matrixin signature 179 194 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip02g00608 358 PRINTS Matrixin signature 203 231 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip02g00608 358 PRINTS Matrixin signature 264 289 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip02g00608 358 PRINTS Matrixin signature 298 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip02g00608 358 SUPERFAMILY PGBD-like 49 125 IPR036365 -
Aip02g00608 358 Gene3D Collagenase (Catalytic Domain) 48 316 IPR024079 GO:0008237
Aip02g00608 358 Pfam Matrixin 154 311 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Aip02g00608 358 Pfam Putative peptidoglycan binding domain 57 116 IPR002477 -
Aip02g00608 358 SMART col_5 145 312 IPR006026 GO:0006508|GO:0008237|GO:0008270
Aip02g00608 358 PANTHER MATRIX METALLOPROTEINASE 25 336 - -
Aip02g00608 358 PANTHER METALLOENDOPROTEINASE 4-MMP 25 336 - -
Aip02g00608 358 CDD ZnMc_MMP 148 311 IPR033739 GO:0008237|GO:0008270
Aip02g00608 358 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 141 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00608 Aip-Chr2 9131028 9132607 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00608 - K07999 gmx:100781237 425.631