Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00315 ATGGCATCTTCCATCATCTCACAGTACCATAGCCTTAAAGATAATCATAATCCATTATCTTTACATCATCTTGATCCTTATTATGTTCATAACAACACACAAATCCTTAGAAGCCATTCATCATCCACTTCAATTTCTGTTGGAGTGTTAGATAAGAAGCCTCATTTTTCTGATACCCTATTTGCCCCACCAAACCTTTCTCCATGCTTTCACTTTTTGGATGAATTGTGTGAGATAAGGGATTTGAATTCTGTGAGGGAACTACATGCACAGATGCTGAAAATGCCAAGAAACAAAGGTGGTAGTAGTACCTTGGCCACAATAGATGAAACCGTTATGAGATACTATTTGGAATTTGATGATTTTGTGTCTGCAATAAAGGTTTTCTTTGTTGGTTTATCGAGGAATTATCTTCTATGGAACTCTTTCTTGGAGAAATTTGGAAGTTTTGGAGGTGACCCTTATGAGATTCTTGCTGTATTTGGTGAACTGCATAAGAAAGGTGTTGAATTTGATAGCATAGCTTTCACTGTTGTTCTGAAAATTTGCTTGGTTTTGATGGATTTGAAGGTTGGATTAGAGATTCATGCTTGTTTGATAAAGAGAGGATTCCATTTTGATGTGCATTTGTGTTGTGCATTGATCAATTTGTATGAGAAGTGCTGGGGTGTAGATAGAGCATACCAAGTGTTTGATGAAGCGCCCCAGAAAGAAGATTTCTTGTGGAACACGATAATTATGGCGAGCCTGAGGAGTGAGAAGTGGTTTGATGGCTTAGAATTGTTTCGCGGCATGCAGTTATCTTCGGCTAAAGCCACCGGTGGCACCATTGTCAAGGTGCTGCAAGCATGTGGAAAATTGAGAGCTCTCAACGAAGGGAAACAAATTCATGGATATGTTTTAAGGCGGGGATTAGTGTCGAACATGTCCATTAGCAATTCCATAATTAGCATGTACTCTAAGAATCATAGTCTTAAAATGGCTAGAACATTTTTTGATTCAATGGAGGATTATAACTTGTCATCTTGGAACTCAATTATTTCATGTTATGCTGGTTATGGCAACTTGGAAGATGCCCTGGATATCTTCCAAGAAATGGAAGCTTCCGGCATTAAACCAGACATTATAACTTGGAATTCTCTTATGTCAGGTCTTCTTCTTCAGGGTTCATACAAAGCTGTTCTGGCCAATTTCCGGAGCCTGCAAGTCGAAGGCTTGAAGCCGGATTCGGGCTCGGTAACTAGTGCACTACAAGCAATTATTGAATTGGGTATCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATCATGATGTTTATGTTTGCACTTCATTGATGGATATGTATATCAAGAATGATGAGTTACATAAAGCTCAAAAAGTGTTCCATCGCACAAAGAACAAAAACATCTGTGCTTGGAATTCATTGATATCAGGGTACTCCTTCAAGGGACAGTTTAGTGATGCTGAAGAACTATTGAACCAGATGGAGAAAGAAAGTATAAAACCTGATATAGTTACATGGAACAGTTTGATTTCTGGTTATTCAATGCATGGCCGAAGCGAGGAAGCTATGGATGTGATTAATAGGATGAAGAGTTCAGGATTTTCACCTAATGTGGTTTCATGGACTGCAATGGTATCCGGCAGTTCTCGGAACAAAAATCATATGGATTCCATCCGGTTTTTCGGCCAAATGCAAGCACAAAATGTAAGGCCTAATTCTACTACTATTTGCAGCTTACTTCGAGCTTGCTCCGGCCAGTCGCTTCTAAAGAAAGGCGAAGAGATACACTGCCTCTGCATAAGACATGGATTTATAGAGGATATGTACATAGCCACAGCACTCATTGACATGTATAGCAAGGCAGGGAAGTTGAAAGTAGCATGCGAAATTTTCGGAAGAATAGAGGGGAAAACACTTCCTTGTTGGAACTGTATGATGATGGGATATGCTATTCACGGCCACGGTGAAGAAGTAATTTTTCTTTTTAACAAAATGCTCAAAACTGGTATCATCCCTGATTCTATTACCTTCACAGCTCTTCTATCCGGCTGCAAGAATTCAGGTCGAATCAATGATGGATGGAAGTACTTTGACAGTATGAGTACAGATTACAACATTGTTCCAACAATTGAGCACTATTCTTGCATGGTGGACCTTCTTGGAAAATCTGGTTTTCTTGACGAAGCTCTGCATTTCATCCAAACTATGCCAGTAAATCCGGATGCTAGTATCTGGGGAGCTCTTCTTGCATCCTGCCGAATTCACAAAAACATTATGCTAGCCGAGACTGCGTCGAGGAATCTGTTCAAGCTAGAGCCTTATAATTCTGCCAACTATGTTATAATGATGAATATATATTCGGCTTTAGGCAAATGGGACGACGCGCAGCGCCTTAGAGACACAATGGTTGCTGCAGGGTTGAAAAGCCCTGGTGTTTGGAGCTGGATACAGGTAAATCAAACTACTCATGTGTTCTCTACAGAAGGGAAATCACATCAAGAAGAAGGCGAAATATATTTCGAATTATATCAGTTAGTTTCTAAGGTGAAGAAGCTAGGATATGTGCCTGATATAAGTTGTGTGTATCAAAATATTGACAACAATGAAAAGGAGAAGGTTCTTCTCAGTCACACTGAGAAGCTAGCTATCACATATGGACTCATGAAAACAAAAGGTGGATCACCTATCAGGGTAGTTAAGAACACAAGAATTTGTCAGGATTGTCACACATTAGCCAAGTACATTTCTTCGGCCGAAAATCGCGAGATTTTGCTCCGAGATGGCGGCCGTTTTCACCATTTTGTGAATGGAAAATGCTCCTGTAATGGTTGTTGGTAA 2892 0.3887 MASSIISQYHSLKDNHNPLSLHHLDPYYVHNNTQILRSHSSSTSISVGVLDKKPHFSDTLFAPPNLSPCFHFLDELCEIRDLNSVRELHAQMLKMPRNKGGSSTLATIDETVMRYYLEFDDFVSAIKVFFVGLSRNYLLWNSFLEKFGSFGGDPYEILAVFGELHKKGVEFDSIAFTVVLKICLVLMDLKVGLEIHACLIKRGFHFDVHLCCALINLYEKCWGVDRAYQVFDEAPQKEDFLWNTIIMASLRSEKWFDGLELFRGMQLSSAKATGGTIVKVLQACGKLRALNEGKQIHGYVLRRGLVSNMSISNSIISMYSKNHSLKMARTFFDSMEDYNLSSWNSIISCYAGYGNLEDALDIFQEMEASGIKPDIITWNSLMSGLLLQGSYKAVLANFRSLQVEGLKPDSGSVTSALQAIIELGIFXXXXXXXXXXXXXXXXXXXXXXXXXDHDVYVCTSLMDMYIKNDELHKAQKVFHRTKNKNICAWNSLISGYSFKGQFSDAEELLNQMEKESIKPDIVTWNSLISGYSMHGRSEEAMDVINRMKSSGFSPNVVSWTAMVSGSSRNKNHMDSIRFFGQMQAQNVRPNSTTICSLLRACSGQSLLKKGEEIHCLCIRHGFIEDMYIATALIDMYSKAGKLKVACEIFGRIEGKTLPCWNCMMMGYAIHGHGEEVIFLFNKMLKTGIIPDSITFTALLSGCKNSGRINDGWKYFDSMSTDYNIVPTIEHYSCMVDLLGKSGFLDEALHFIQTMPVNPDASIWGALLASCRIHKNIMLAETASRNLFKLEPYNSANYVIMMNIYSALGKWDDAQRLRDTMVAAGLKSPGVWSWIQVNQTTHVFSTEGKSHQEEGEIYFELYQLVSKVKKLGYVPDISCVYQNIDNNEKEKVLLSHTEKLAITYGLMKTKGGSPIRVVKNTRICQDCHTLAKYISSAENREILLRDGGRFHHFVNGKCSCNGCW 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00315 963 PANTHER OS05G0586900 PROTEIN 135 237 - -
Aip02g00315 963 PANTHER OS05G0586900 PROTEIN 236 951 - -
Aip02g00315 963 Pfam DYW family of nucleic acid deaminases 871 963 IPR032867 GO:0008270
Aip02g00315 963 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 721 IPR002885 -
Aip02g00315 963 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Aip02g00315 963 Gene3D Tetratricopeptide repeat domain 308 426 IPR011990 GO:0005515
Aip02g00315 963 Gene3D Tetratricopeptide repeat domain 606 706 IPR011990 GO:0005515
Aip02g00315 963 Gene3D Tetratricopeptide repeat domain 707 857 IPR011990 GO:0005515
Aip02g00315 963 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Aip02g00315 963 Gene3D Tetratricopeptide repeat domain 448 575 IPR011990 GO:0005515
Aip02g00315 963 Gene3D Tetratricopeptide repeat domain 110 288 IPR011990 GO:0005515
Aip02g00315 963 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Aip02g00315 963 Pfam PPR repeat family 519 565 IPR002885 -
Aip02g00315 963 Pfam PPR repeat family 659 702 IPR002885 -
Aip02g00315 963 Pfam PPR repeat family 340 385 IPR002885 -
Aip02g00315 963 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 793 827 IPR002885 -
Aip02g00315 963 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Aip02g00315 963 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Aip02g00315 963 TIGRFAM PPR: pentatricopeptide repeat domain 488 521 IPR002885 -
Aip02g00315 963 TIGRFAM PPR: pentatricopeptide repeat domain 557 590 IPR002885 -
Aip02g00315 963 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Aip02g00315 963 TIGRFAM PPR: pentatricopeptide repeat domain 659 692 IPR002885 -
Aip02g00315 963 TIGRFAM PPR: pentatricopeptide repeat domain 522 556 IPR002885 -
Aip02g00315 963 TIGRFAM PPR: pentatricopeptide repeat domain 693 727 IPR002885 -
Aip02g00315 963 Pfam PPR repeat 241 266 IPR002885 -
Aip02g00315 963 Pfam PPR repeat 488 516 IPR002885 -
Aip02g00315 963 Pfam PPR repeat 630 654 IPR002885 -
Aip02g00315 963 Pfam PPR repeat 457 486 IPR002885 -
Aip02g00315 963 Pfam PPR repeat 313 339 IPR002885 -
Aip02g00315 963 Pfam PPR repeat 730 754 IPR002885 -
Aip02g00315 963 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Aip02g00315 963 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 236 951 - -
Aip02g00315 963 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 135 237 - -
Aip02g00315 963 Pfam E motif 773 835 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00315 Aip-Chr2 4172313 4175426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00315 151 963 Glycoside Hydrolase AT3G49170 29.664 2.88e-127 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00315 - - adu:107463433 1811.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00315 02 4172313 4175426 Aip02g00315 02 4172313 4175426 ECH