Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00279 ATGACTCGCGGGATAAAACACCGTATGAAAGCCAAGAGAAAGAACAAGGGTTCGAAGAAAGGGGAAGGGTCTTCTTCGGTGCCGCCGCAACATCCGGTGAAGGTGTGGCAACCTGGTGTGGACAAGTTGGAGGAAGGTGAGGAACTCCAGTGTGATCCTTCTGCTTACAACTCTCTTCATGCCTTTCACATCGGATGGCCCTGTTTGAGCTTTGATATTGTACGAGACACTCTGGGTTTAGTTCGAACAGAATTTCCCCACACAGTATATTTCATGGCAGGGACTCAGGCGGAGAAAGCTTCCTGGAATTCTATTGGAATATTTAAAGTTTCAAATATTACTGGGAAGAGACGTGAGCTGGTGCCTAAACATGAAGGTGATGAGGATGGCGAGGATAGTGATAGTGAAGATGATAGTGACGATGAAGATGAAAATGGAGCTCGGGGTCCCACCTTGCAGGCAACAGCCCTGATTTTTTTGCGGAAGGTAACACACGAAGGATGTGTCAACCGTATACGCTCCATGTCACAAAACCCACATATATGTGCAGCTTGGGCAGATACTGGTTATGTACAGGTTTGGGACTTAAGCTCTCATCTGAATGCTCTAGCAGAGTCAGAAACAGAAGGTATCCAAGGAGCTGCTGCAGTTTTTACTCAGGACCCCCTATCTAAATATAAACACAAAGATGAAGGCTATGCTATTGACTGGAATCCTCTTGTTCCTGGAAGGCTTGTATCTGGGGATTGCAAGAATTGTATTTATCTGTGGGAACCGACATCTGCTGCAACATGGAATATTGACAATACTCCTTTTGTTGGACATACTGCTAGTGTTGAAGATCTGCAATGGAGCCCTGCGGAGCCTGATGTTTTTGCTTCTTGTTCTGTGGATGGAAGCATTGCTATATGGGATACTCGACGGGGGAAATCTCCAGCTGCATCTTTTAAAGCACATAACGCTGATGTGAATGTTATATCATGGAACAGTAGGTTGGCTAGTATTATGTTGGCCTCGGGGAGTGATGATGGGACAATTTCCATTCGTGATCTCAGATTGCTCAAGGAAGGAGATTCTGTGGTAGCACATTTTGAATACCATAAACACCCAATCACATCCATTGAGTGGAGTCCACATGAAGCCTCATCATTGGCCGTTTCGTCATCCGATAATCAGCTTACGATATGGGACCTTTCTTTAGAAAAGGACGAGGAAGAGGAGGCTGAATTCAAGGCTCAAACCAAAGAACTAGTGAATGCCCCTGAAGATCTTCCTCCCCAACTACTATTTATTCATCAGGGACAAAAAGACCTCAAAGAACTACATTGGCATGCTCAGATTCCTGGGATGATTGTATCTACAGCAGCAGATGGATTCAACATCCTTATGCCTTCAAATATTCAGAGCACTTTGCCATCAGATGACGTGGACAGTGTTCTGAATACCATGTTGTGGCCAAGAAGATATTTTTCCCTCAGCATCAATGAAAAACTCTTGGTTAATTACTTAGCTGAGGAACTGCTGCATTTGGATTATTGCTTGGTGTTGAGTTTCAGAAGTTATGACTGCAAATGGGAAGGTTGGCCAGAAATCTTGCAAAATGAGTGTGTTATTGGTAATGATGATAACTTGAGTAGATGTGTTGCTTCTTTAGCTGGATCTGGACCTCCTAGTACTAGTTATTGTTCCATGACAGATTCTGCTCACATTAATGATGATTTAACTGTTAGAACTCATAATAAGAACCCTAATTTCTACCCTCAGAGGAATCAAGTAGCTATTGAGTCTAGGTATAGTAGCTTGAGTAGAGAAATTGTGCAACAAGATGAAGAGCAAATACCATTGAGACTAAGCAAAGGGGTTAAGGGAATTGATTCCGAATTTCGGGGCCTGAAATCATCACTGAGAGTTTCTGCAAATAGAAGCAATGTGGACAAGATCTTTACCTCGAGCAATGGCCTTGTTATTAATGGAACTACTCAGAATACTTCATCTGCATATAGTGTTTCTCATTTGATTGTGAAGCAAACCTTGAAGGGAAAGGGAGTTATTTGCAAGGACTTCGACGGAAGAATTGGTCCTGCCGGAGTAGTACTTATGAGGCAGGAGGAGGATGAGTCTCATCAATCTGATATGCCGAAACCAGATGCGACTGATAACACGCCTTCCCTGCAAGTAACTGTGAAGTCTGGCACAGGTTCCTCGAATGACGGGATGAACTTGAGAGAGTGGCTTAGGCCACAAGGTCATAAAATCGATAAATCAGGGAGGCTACAAATATTCAAGCAGATTCTGGAATTGGTTGATTTTGCACATTCCCAAGGTGTTGTCATGCTAAACTTAAGACCATCTTGTTTCACTCTATCACCTTCTTCGAGTAAAATCAAGTACATCGGTTCATCTGGCCAACAGGAGTTGCATAAATTATTGACTTGCAATGTGAACAAAAAAATGCCTCTAGAACAGGACGCCGGTGCGAGCCAAATCTTGAGAATGAAGCAGCAAAATCTCTATGAAGAGACAAGATCTCTTCGGCAGCATCATCATTTCACTTCCATTCATGGATGTAGGACTACAATGGCGAATCAAATTGGATCTACCGTAAATGAGTCCACCAAATTAGAAGAGAAGAAATGTATGTCTTTAACGCAATTAGAAGAGAAATGGTATACTAGTCCAGAAGAGCTAGATGGTGGGGTTTGCACATTTTCTTCAAATATTTATAGCCTTGGAGTTCTTCTATTTGAGTTGCTGTGCAATATTGAGTCATGGGAGTTGCATTCGGCCGTGATGTCAGATCTATGTCATAGAATCTTACCACCAAGATTTCTATCAGAAAATCCAAAGGAAGCTGGCTTTTGTCTTTGGCATCTTCATCCTGATCCGTCTTCTCGCCCCAATACCAGGATGATTTTAGAGTCTCAGTTTATAGTCGAATCAGAGAAATCAAATTCTGCAGATGATGTTCTGCCGGTTGGAGTATCAGATGATGATGAAGCTGAAACACAGCAATTACTACATTTTCTAGTCTCACTTCAAGAAGAAAAGAAAAAACAGGAATCAAAGTTGGTAGAAGAGCTAAGTTGGTTGGATGAAGACATTAAGTTGGTAGAAAGAAGTAATTCGCACGAGACAGATTCGAGGTTTCCTTTGAAACAAGTGAACTATGCTGAATTGATAGGAAGCAGTTATCATTTTCCAGAACATGCCATTTCAAGTGCTAATGAGGCAAGATTCTTGAGTAACATAAATCAGCTAGAGAGTTCTTATTTTTCAATGAGATGCCAAATGCTACTCAAAGAGGTTTCAACCGTTGCAAACTATGATAAAGATGTGATTGAAAGTAGAGATAGATTGCATCATACAGAGAATGTTACTAAGGAGCCCAATAGAATTCAGAGTTCTGCTGGTTCTTTAGGAACCTTCTTTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTTGAAGAACGCGGCACACTGAGAAACCGAGATCTGCTTAGCTCTGCCAATGTGATATGTGCTTTGAGTTTTGACCGCGACGAGGATTACATCGCAGCAGCCGGAGTTTCAAAGAAGATCAAGGTTTTTGACTTGAGTAGTATTATGAGTGGTTCTGTTGACATCCAGTACCCTGTAGTCGAGATGTCGAATAAATCAAAGCTTAGCTGTGTGTGCTGGAACAGCTATATTAAAAATCATCTGGCTTCTACTGATTATGATGGTGTTGTTCAGATGTGGGATGCAGGCACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCATTTTTCTCTGTCAGATCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTCTGGAATATCGGCGAGGCATGCTTTCTTTTAAACTCTGTAGGAACCATATGGAACCCTGCCAATGTATGCTGTGTTCAGTTCTCCAGTTTCTCAACACACCTTTTGTTCTTTGGTTCAGCTGATTACAAGGTCTACGGTTACGATCTTCGCCACACTCGAGTCCCTTGGTGCACCTTAGGTGGTCATGGAAAAGCTGTTAGCTATGTAAAATCTGTAGATGCTGAAACAGTTGTTTCTGCTTCCACTGACAACTCTTTGAAGCTATGGGACCTGAAGAAAGCTAGTTCTTCTGGTTTGTCATCTGATGCTTGTGCCTTAACCTTCAAAGGTCATAGTAATGAAAAGAATTTTGTAGGTTTATCTGTTTCAGATGGATATATTGCATGCGGTTCGGAAACTAATGAGGTATATTGTTATCACAAGTCACTGCCATTGCCAATCACTTCTCACAAATTCGAATCTATCGATCCGGTTTCTGGTCATTCGACTAGTGATGACAATAATGGACAGTTTGTTTCTAGTGTCTGCTGGAAAAAGAAATCTAATATGCTTGTTGCCGCCAATTCGATCGGAATTGTGAAACTGCTACAGATGGTTTGA 4467 0.4193 MTRGIKHRMKAKRKNKGSKKGEGSSSVPPQHPVKVWQPGVDKLEEGEELQCDPSAYNSLHAFHIGWPCLSFDIVRDTLGLVRTEFPHTVYFMAGTQAEKASWNSIGIFKVSNITGKRRELVPKHEGDEDGEDSDSEDDSDDEDENGARGPTLQATALIFLRKVTHEGCVNRIRSMSQNPHICAAWADTGYVQVWDLSSHLNALAESETEGIQGAAAVFTQDPLSKYKHKDEGYAIDWNPLVPGRLVSGDCKNCIYLWEPTSAATWNIDNTPFVGHTASVEDLQWSPAEPDVFASCSVDGSIAIWDTRRGKSPAASFKAHNADVNVISWNSRLASIMLASGSDDGTISIRDLRLLKEGDSVVAHFEYHKHPITSIEWSPHEASSLAVSSSDNQLTIWDLSLEKDEEEEAEFKAQTKELVNAPEDLPPQLLFIHQGQKDLKELHWHAQIPGMIVSTAADGFNILMPSNIQSTLPSDDVDSVLNTMLWPRRYFSLSINEKLLVNYLAEELLHLDYCLVLSFRSYDCKWEGWPEILQNECVIGNDDNLSRCVASLAGSGPPSTSYCSMTDSAHINDDLTVRTHNKNPNFYPQRNQVAIESRYSSLSREIVQQDEEQIPLRLSKGVKGIDSEFRGLKSSLRVSANRSNVDKIFTSSNGLVINGTTQNTSSAYSVSHLIVKQTLKGKGVICKDFDGRIGPAGVVLMRQEEDESHQSDMPKPDATDNTPSLQVTVKSGTGSSNDGMNLREWLRPQGHKIDKSGRLQIFKQILELVDFAHSQGVVMLNLRPSCFTLSPSSSKIKYIGSSGQQELHKLLTCNVNKKMPLEQDAGASQILRMKQQNLYEETRSLRQHHHFTSIHGCRTTMANQIGSTVNESTKLEEKKCMSLTQLEEKWYTSPEELDGGVCTFSSNIYSLGVLLFELLCNIESWELHSAVMSDLCHRILPPRFLSENPKEAGFCLWHLHPDPSSRPNTRMILESQFIVESEKSNSADDVLPVGVSDDDEAETQQLLHFLVSLQEEKKKQESKLVEELSWLDEDIKLVERSNSHETDSRFPLKQVNYAELIGSSYHFPEHAISSANEARFLSNINQLESSYFSMRCQMLLKEVSTVANYDKDVIESRDRLHHTENVTKEPNRIQSSAGSLGTFFEGLCKFARYSKFEERGTLRNRDLLSSANVICALSFDRDEDYIAAAGVSKKIKVFDLSSIMSGSVDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWNIGEACFLLNSVGTIWNPANVCCVQFSSFSTHLLFFGSADYKVYGYDLRHTRVPWCTLGGHGKAVSYVKSVDAETVVSASTDNSLKLWDLKKASSSGLSSDACALTFKGHSNEKNFVGLSVSDGYIACGSETNEVYCYHKSLPLPITSHKFESIDPVSGHSTSDDNNGQFVSSVCWKKKSNMLVAANSIGIVKLLQMV 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00279 1488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 310 - -
Aip02g00279 1488 SMART WD40_4 1209 1248 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 1251 1291 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 264 305 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 156 195 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 219 258 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 1440 1486 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 357 397 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 1341 1379 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 309 350 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 1390 1429 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 1298 1337 IPR001680 GO:0005515
Aip02g00279 1488 SMART WD40_4 1163 1198 IPR001680 GO:0005515
Aip02g00279 1488 SUPERFAMILY Protein kinase-like (PK-like) 737 976 IPR011009 -
Aip02g00279 1488 Gene3D Transferase(Phosphotransferase) domain 1 737 988 - -
Aip02g00279 1488 SMART serkin_6 667 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g00279 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1258 1292 IPR001680 GO:0005515
Aip02g00279 1488 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 47 113 IPR022052 -
Aip02g00279 1488 PRINTS G protein beta WD-40 repeat signature 1278 1292 IPR020472 -
Aip02g00279 1488 PRINTS G protein beta WD-40 repeat signature 1366 1380 IPR020472 -
Aip02g00279 1488 PRINTS G protein beta WD-40 repeat signature 1235 1249 IPR020472 -
Aip02g00279 1488 SUPERFAMILY WD40 repeat-like 164 458 IPR036322 GO:0005515
Aip02g00279 1488 PANTHER PROTEIN SPA1-RELATED 2 527 1488 IPR044630 GO:0009640
Aip02g00279 1488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 364 399 - -
Aip02g00279 1488 MobiDBLite consensus disorder prediction 119 148 - -
Aip02g00279 1488 ProSitePatterns Trp-Asp (WD) repeats signature. 1366 1380 IPR019775 -
Aip02g00279 1488 Gene3D - 1142 1488 IPR015943 GO:0005515
Aip02g00279 1488 MobiDBLite consensus disorder prediction 1 17 - -
Aip02g00279 1488 SUPERFAMILY WD40 repeat-like 1170 1483 IPR036322 GO:0005515
Aip02g00279 1488 MobiDBLite consensus disorder prediction 1 35 - -
Aip02g00279 1488 Gene3D - 48 468 IPR015943 GO:0005515
Aip02g00279 1488 PANTHER LIGASE COP1, PUTATIVE-RELATED 527 1488 - -
Aip02g00279 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 352 IPR001680 GO:0005515
Aip02g00279 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 314 IPR001680 GO:0005515
Aip02g00279 1488 MobiDBLite consensus disorder prediction 129 144 - -
Aip02g00279 1488 ProSiteProfiles Protein kinase domain profile. 641 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g00279 1488 Pfam WD domain, G-beta repeat 362 397 IPR001680 GO:0005515
Aip02g00279 1488 Pfam WD domain, G-beta repeat 272 305 IPR001680 GO:0005515
Aip02g00279 1488 Pfam WD domain, G-beta repeat 1253 1291 IPR001680 GO:0005515
Aip02g00279 1488 Pfam WD domain, G-beta repeat 314 348 IPR001680 GO:0005515
Aip02g00279 1488 Pfam WD domain, G-beta repeat 1347 1379 IPR001680 GO:0005515
Aip02g00279 1488 MobiDBLite consensus disorder prediction 703 722 - -
Aip02g00279 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1348 1388 IPR001680 GO:0005515
Aip02g00279 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 406 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00279 Aip-Chr2 3647093 3663645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00279 243 398 Miscellaneous Gene Families AT5G08390 28.846 8.27e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00279 K16240 - gmx:100802144 1255.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00279 02 3647093 3663645 Aip02g00279 02 3647093 3663645 ECH