Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03323 ATGGCCACCGTCGAACCAATCCAGAACGGCACCTCCAACAATGTCTCCCAGCCACTTGCACCGGCAAATGCCGCCGCCGCCGAACAACCCTCCACCGCCACCACCACTACAACCGCCTTAGCGGCAGCCGCCACCGAATCCACTGCCGTAGGCAGCGCAAACCCTTCAATCGATGCACCCGAATCCGAGGCGGTTCCGGCACCTGAAGCTGCCGCAACCGCCAGTACCACCACCACTCCGCCGGAGAAGAGATGGCCTGGTTGGCCCGGCCACTGCGTGTTCCGGCTCATCGTGCCGGTGCTCAAAGTCGGCAGCATAATTGGGCGGAAGGGCGAGCTCATTAAGAAGACATGTGAAGAGACTCGAGCTCGCATTCGCGTTCTAGATGGTGCTGTCGGCACTTCCGATCGAATCGTACTTATATCAGGGAAGGAAGATCCAGAGACAGCATTCTCTCCTGCAATGGATGCTGTAATGAGGATTTTTAAGCGTATCTCAGGATTATCTGAAACTGAGGGCGAGAATATGACATTGGGAGCTGCCGGGGGTAATTTTTGTTCTATCCGTTTATTGGTAGCATCAACACAGGCCATCAATTTGATTGGAAAGCAGGGCTCGTTAATCAAATCCATACAGGAAAGCACTGCTGCTTCTGTTAGAGTATTGTCAGGAGATGAGGTGCCATTTTATGCTGCGGCCGATGAAAGGATTGTAGAGCTGCAGGGAGAAGTCTTGAAGGTGCTTAAGGCACTGGAAGCAGTAGTTGGGCACCTGAGGAAATTTTTGGTGGATCATAGTGTTCTTCCCCTATTTGAGAAAACTTACAATGCAACAATCTCCCAAGACCACCAGGTGGATACCTGGGCTGACAAGCCATCGCTGTATAGTGCTTCCCAACCTTCCATTGTTGCTGATGTTTCTCTTCCAACAAAAAGGGATGCTCTCTTTGTTGAGCGTGAAAGTCAATTGGATTCATTACTCCCTTCCTCCTCAGTGTCACTGTACGGGCAAGATTCTTCACTTTCCGGTCTTCGTTCTTCAGCTCTGGGCCGTGCTGCTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATAATTGGTATACAAGGGACTAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACGGTTCAGGAGAGCAGAGTGCCTGATGAAATTATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAGTTGGCACAACAACTGATTCAGGAAGTGATAACTAATCACAAAGAGCCTGCCGCTAGTGCTTACAGCAGGTTAGATGCCGATCTGAGGTCTACTTACGCCCAATTGGGCAGTACATCATACTCATCATCTTCGTTGTCCACGCAACCTTACAGCGGTTATGGTTCTTCTGGTCTTGGAGGCTACAGTTCTTTCAGACTTTAA 1452 0.4972 MATVEPIQNGTSNNVSQPLAPANAAAAEQPSTATTTTTALAAAATESTAVGSANPSIDAPESEAVPAPEAAATASTTTTPPEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDGAVGTSDRIVLISGKEDPETAFSPAMDAVMRIFKRISGLSETEGENMTLGAAGGNFCSIRLLVASTQAINLIGKQGSLIKSIQESTAASVRVLSGDEVPFYAAADERIVELQGEVLKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNATISQDHQVDTWADKPSLYSASQPSIVADVSLPTKRDALFVERESQLDSLLPSSSVSLYGQDSSLSGLRSSALGRAAGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQLAQQLIQEVITNHKEPAASAYSRLDADLRSTYAQLGSTSYSSSSLSTQPYSGYGSSGLGGYSSFRL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03323 483 ProSiteProfiles Type-1 KH domain profile. 91 158 - -
Aip01g03323 483 MobiDBLite consensus disorder prediction 1 20 - -
Aip01g03323 483 Pfam KH domain 94 146 IPR004088 GO:0003723
Aip01g03323 483 Pfam KH domain 188 254 IPR004088 GO:0003723
Aip01g03323 483 Pfam KH domain 363 425 IPR004088 GO:0003723
Aip01g03323 483 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 71 477 - -
Aip01g03323 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 358 429 IPR036612 GO:0003723
Aip01g03323 483 ProSiteProfiles Type-1 KH domain profile. 360 423 - -
Aip01g03323 483 MobiDBLite consensus disorder prediction 27 55 - -
Aip01g03323 483 PANTHER PROTEIN, PUTATIVE-RELATED 71 477 - -
Aip01g03323 483 Gene3D K Homology domain, type 1 359 434 IPR036612 GO:0003723
Aip01g03323 483 Gene3D - 91 262 - -
Aip01g03323 483 SMART kh_6 90 166 IPR004087 GO:0003676
Aip01g03323 483 SMART kh_6 184 259 IPR004087 GO:0003676
Aip01g03323 483 SMART kh_6 359 428 IPR004087 GO:0003676
Aip01g03323 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 182 266 IPR036612 GO:0003723
Aip01g03323 483 CDD PCBP_like_KH 93 162 - -
Aip01g03323 483 CDD KH-I 362 424 - -
Aip01g03323 483 ProSiteProfiles Type-1 KH domain profile. 185 254 - -
Aip01g03323 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 84 159 IPR036612 GO:0003723
Aip01g03323 483 CDD PCBP_like_KH 187 255 - -
Aip01g03323 483 MobiDBLite consensus disorder prediction 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03323 Aip-Chr1 136348289 136352368 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03323 K21444 - gmx:100802089 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03323 01 136348289 136352368 Aip04g01432 04 28651922 28657856 PCT