Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02959 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGCGTCGATTTGGGCGGTCGCAGCTCCAAGGAAAGGGACAGGAAGAACCTTCTAGAACAGACTCGCGTCGAACGCAACCGCCGCCTCTGGCACCGTCAACAGAACTCTGCTGCGCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAAGATGTCAGACTTGAAAAGTCTAGGTTGCGAGAGCAGTTCTACAAGACCTATGGCAAGTACTGCCAGAATGTAGACAGGAATTCTTTCTGTGTCAACTCTGATTTCCTTCGCCAGTTCCTTTATTTCTTTAAGGCAGACAATATAGATGATTTTTTAGTTCTCGTGCAGATATGCCGATTGCTTCAGCAGTTCGTTCACGAAGATGGGGATGTTGTCAAACTTTTTGCTGGTGTGGATTACTCATCCACGGGTGGTTTGGTGAATTACCGAGTGAAGCAACTTGTATATTCTTGTATTTGTGCACTACATCAGAATAGAAATCAGTTGAAGGATCAGCTTTTATTGAGTCCGGAGGAATTGGATGCGTCGGCTGTGCCTTTATTGGAAGTTATAGTATTGTTAATTGATCCCAAATTGCCATGGAGCTGCAAGATAGTAGGATATCTCTTTCAAAACAATGCATTAGGGCTACTCAGAGAGATTATCCTTACAGGAAAGGATAATGCAGAAAATTATTTTCCCATTGGAAAAGGATCATCGTTGGAGCGTCTTCTTATGGTTGTAATTTGTCACATTGGTCAGAAACCATGTATTTGTTCAGATATCAATCCAAGATATAGCTTTGCATCACAGATCATTACCATTCCATTCTTGTGGCATCTCTTCCCAAACTTAAGACAGGTTTTTGCAGCAGAGGGCATGAGTCAACATTATATTCATCATATGGCAACATTTGGGCAAAATCTAATCAATTTGCTACCAAAAGATATGTCAAATGAAGTTCCTAGCTATGCATGTATGCTTGGAAATATATTAGAAACTTCTGGAGTTGCTTTATCTCAGCCTGCGTGTTCATTTGATATGGCCGTAGATCTTGCTGCTGTTACTACCTTTCTAATGGAGGCACTTCCTTCTGTGAGAACATCTGATAATAGAGAAAGTTCAATGATTCTTGATGATGATATGATTGAAGATGAAGCAGCTGTGGAAGTAGCTTTAGATAAGAAACTGGAACAGCAGATTTATAATGCCATAAACCCTCGCTTCCTTCTACATCTGACAAATATACTATTTAGAGAGATTTCATCTGTCAATGCTTTAGAGTATGGACCAGATGATAGAGAGGTGGCAGCTGTTGGTGCAGCTTGTGGGTTTTTGTATGTTACCTTCAACAAACTTCCCATGGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTCCTATGCTTTGGAATTTTATGAAGCGGTGCCATGAAAATAAGAAATGGTCATCTTTGTCTGAGTGGTTATCATACCTCTCAGGTGATGCACCTGGTTGGCTGTTACCACTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATAGTCGATAATGAGGAATTTTATGAGCAGGAGAGGCCACTGTCACTGAAGGATATCAGAAGCCTTATCATTATATTGAGACAGGCTTTATGGCAGCTGCTGTGGGTAAATCATACCACAAATCCTAATTTGCTGAAATCTGCTTCAGCCAGTTCAGCTAGTAAGAGGCAGTCTGTTGAAGCTATTCAACAGAGGGTTAGCATTGTGGTTTCTGAGCTTCTTTCACAGCTGCAAGATTGGAACAACAGGCGGCAGTTTACATCCCCCAGTGATTTTCATGCTGATGGGGTGAATGACTTTTTTATCTCCCAGGCTGTAACAGAAAACACACGAGCAAATGAAATTTTGAAGCAGGCCCCTTTCTTGATACCATTTACGAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCAGTTAGGCAAAGACATGGTTCTCAGGCTGGATTTACTCGAAACCGGTTCAGAATAAAACGAGATCGCATTTTAGAAGATGCTTATAATCAAATGAGTCAGTTGTCCGAAGATAATCTTCGAGGACTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCGGGAATCGATGGGGGTGGAATATTCAAAGATTTTATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTGTTCAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATTTCCAATTTTTTCACTTTCTTGGCACTCTTCTTGCAAAGGCCATGTTTGAAGGAATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAACTTAAACAAAAGTACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGCCATCTTATTTTTCTCAAGCATTATGATGGTGACATATCAGACTTGGAATTATACTTTGTGATAGTAAACAATGAATATGGTGAGCAAACAGAGGAGGAACTGCTCCCGGGGGGAAGGAATCTGCGTGTTACTAATGACAATGTCATTACTTTTATTCATCTTGTAGCAAATCACCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCTTGAAGGGATTTCAACAACTTATTCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGCTTTTGATATCAGGTTCACTGGAGAGCTTGGATGTCGATGATCTGCGGCAGCATACCAACTATGCAGGAGGCTATCACAGTGATCATTATGTGATTGAGATGTTTTGGGAGATTCTCAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTCTGAAGTTTGTGACAGGTTGCTCTCGTGGACCATTGCTGGGTTTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGTGA 2946 0.4084 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWHRQQNSAALKIQKCFRGRKDVRLEKSRLREQFYKTYGKYCQNVDRNSFCVNSDFLRQFLYFFKADNIDDFLVLVQICRLLQQFVHEDGDVVKLFAGVDYSSTGGLVNYRVKQLVYSCICALHQNRNQLKDQLLLSPEELDASAVPLLEVIVLLIDPKLPWSCKIVGYLFQNNALGLLREIILTGKDNAENYFPIGKGSSLERLLMVVICHIGQKPCICSDINPRYSFASQIITIPFLWHLFPNLRQVFAAEGMSQHYIHHMATFGQNLINLLPKDMSNEVPSYACMLGNILETSGVALSQPACSFDMAVDLAAVTTFLMEALPSVRTSDNRESSMILDDDMIEDEAAVEVALDKKLEQQIYNAINPRFLLHLTNILFREISSVNALEYGPDDREVAAVGAACGFLYVTFNKLPMERIMTVLAYRTELVPMLWNFMKRCHENKKWSSLSEWLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQERPLSLKDIRSLIIILRQALWQLLWVNHTTNPNLLKSASASSASKRQSVEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVTENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGSQAGFTRNRFRIKRDRILEDAYNQMSQLSEDNLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYDGDISDLELYFVIVNNEYGEQTEEELLPGGRNLRVTNDNVITFIHLVANHRLNFQIRQQSSHFLKGFQQLIQKDWIDMFNEHELQLLISGSLESLDVDDLRQHTNYAGGYHSDHYVIEMFWEILKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPLFCIQR 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02959 981 Pfam HECT-domain (ubiquitin-transferase) 727 981 IPR000569 GO:0004842
Aip01g02959 981 Gene3D Hect, E3 ligase catalytic domain 796 875 - -
Aip01g02959 981 SUPERFAMILY Hect, E3 ligase catalytic domain 663 980 IPR035983 GO:0004842
Aip01g02959 981 Gene3D Hect, E3 ligase catalytic domain 914 981 - -
Aip01g02959 981 SMART hect_3 689 981 IPR000569 GO:0004842
Aip01g02959 981 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Aip01g02959 981 MobiDBLite consensus disorder prediction 1 22 - -
Aip01g02959 981 CDD HECTc 670 981 IPR000569 GO:0004842
Aip01g02959 981 PANTHER BNAC01G43970D PROTEIN 1 981 - -
Aip01g02959 981 ProSiteProfiles HECT domain profile. 691 981 IPR000569 GO:0004842
Aip01g02959 981 Gene3D Hect, E3 ligase catalytic domains 672 910 - -
Aip01g02959 981 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 981 IPR044611 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02959 Aip-Chr1 131902216 131911349 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02959 K10589 - gmx:100789933 1698.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02959 01 131902216 131911349 Aip01g02959 01 131902216 131911349 ECH