Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02911 ATGAGTTCATCACATCACAAGCAGAAGGAGGCAGCTAACACCATGAAAGGAAGAGAGCAGATCTTCAAGGTCTTCGATATCGTTTCGGAAGTCCCGGATGACCATTTCTTTGGCTCACCATCAAAAGAATCCAGCAGTTACAGCACCGCCAACAGCAATCTCTCCAAGTGCGCCATGAAAGAGTGGAAGATCTTGGAACAGAACCTTCCAGACTCCATCTACATTCGGGTCTACGAGAACCGCATTGACCTAATGAGGGCGGTGATTATAGGCGCCGCGGGCACACCGTACCACGATGGTCTCTTCTTCTTCGACATCAAGCTCCCTTCTAAATATCCAAACTATCCTCCGGAATTATACTTCCACTCGTTCGGGCACCGTCTAAACCCGAACCTCTACAGCAGCGGCAGGGTCTGCTTGAGCCTCCTTAACACGTGGCACGGCAGGACAGCCGAGAAGTGGGATCCACGCGCTTCGACGCTCCTTCAGGTCTTGCTCTCAATCCAAGCACTCGTTCTCAACGAGCAGCCGTTTTTCAATGAGCCTGGGACTTCGTATGGACGACCTATCTTTCAGAGCAGGTCACGTGTCTACACCGAGATGGCGTTTCAGCTCACGTGGGAAGTTGCCATGAACCTCGTTCGTAGGCCGCCCGAGCACTTTGAGGCCTTCGTCCTTCAACACTTCAGCACGCGCTCCGTGGCTGTCTTGGACGCGTGCCGCGAGTACGCCAATGAGCGCGTGTGGGTCGGGTATTACTGCAGGAACCAAGGTGGTGATGGTAGGTCATCCAGTTTGTGTTCTTCGTCAAATGTGAAAGTTTCGGCATCTTTTAAGAAGAGTTTGGTGGAAATTTTGTACCCTAGGCTGGTTCAAACGTTTCAATCATGCGGTGCGGATTTGAAAGGTACCCCAAAAGAGTTGGAATCAGAAGTTATTATTAACAAGCAACCCAAAAGGAAGCAAATGATTGATCCGACGAAGCATGAAAACAAGGGTGAGGTTGGGAAGCATAACAATAAGGGTGGGATCTTCATGAAAGCTGTGGATAGGATCAAAACGGCGTTGGGATGGAAGAAGAAGAAGACAGACTCCAAACAATTCTAG 1107 0.5005 MSSSHHKQKEAANTMKGREQIFKVFDIVSEVPDDHFFGSPSKESSSYSTANSNLSKCAMKEWKILEQNLPDSIYIRVYENRIDLMRAVIIGAAGTPYHDGLFFFDIKLPSKYPNYPPELYFHSFGHRLNPNLYSSGRVCLSLLNTWHGRTAEKWDPRASTLLQVLLSIQALVLNEQPFFNEPGTSYGRPIFQSRSRVYTEMAFQLTWEVAMNLVRRPPEHFEAFVLQHFSTRSVAVLDACREYANERVWVGYYCRNQGGDGRSSSLCSSSNVKVSASFKKSLVEILYPRLVQTFQSCGADLKGTPKELESEVIINKQPKRKQMIDPTKHENKGEVGKHNNKGGIFMKAVDRIKTALGWKKKKTDSKQF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02911 368 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 53 211 IPR000608 -
Aip01g02911 368 SMART ubc_7 56 211 - -
Aip01g02911 368 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38-RELATED 9 321 - -
Aip01g02911 368 CDD UBCc 59 206 IPR000608 -
Aip01g02911 368 Gene3D Ubiquitin Conjugating Enzyme 7 284 IPR016135 -
Aip01g02911 368 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 9 321 - -
Aip01g02911 368 SUPERFAMILY UBC-like 42 219 IPR016135 -
Aip01g02911 368 Pfam Ubiquitin-conjugating enzyme 59 182 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02911 Aip-Chr1 131054925 131056031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02911 18 300 Miscellaneous Gene Families AT2G33770 47.586 3.72e-71 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02911 K10581 - gmx:100791343 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02911 01 131054925 131056031 Aip01g02911 01 131054925 131056031 ECH