Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02873 ATGAGGATCGACTTGGATTCTATCGCTCGCAGAGTCGAAGTTGACAATcgcattccccttcgttattactatcgtatcgccgataacctcctcaagcagGCAAGTATCTACCGGCAGGAGAACAATATAGTTGACTTGTATATCATACTTCTCAGATTTTCAAGTTTGGTTTCTGAGACTATACCATACCATCGAGATTATCAAGCTTCACTTCATAATGAAAGAGCAGCATATAAGAAGAGATTACTAGCTGTAATAGATGAGCTTGAAGCATTGCGGCCTGAATTTAAACTCCTTGTGAACAAATTGAATAATTCACATCTTGAAGCTCCATTGCCTGGAGAAAACAGCTTTAATATGGCTTTGCCGAGTTCAGCAAATTCGTCCTTGGAATGGCCTCCTGTCAATAAAAGCTCTAACTCCCCCATGGATTTTCGACAGTCTGCTGGATTGGGTTCACACTCTTCATGGAAATATAACAATAATGTCTCATTTTCAAATTCCATCCCCATTGACAAGCAGTTTCAGAAACTATCCCTTAGTGTACCTCCTCCAAAGAAGGAGACTTTGTCTAGACACTCATTCTTAGGGCCAAGTGGTCTTCGGGGCCAATGGCTTGGACCTAGTGCAGAAATTAAGGTTCAATATCCAAGCAGTACTGATCTGACACACGTCAAAGATTCAAGCTTGAATCAGGCTGGGCAATATGATATTGTGGCAATTAAAGAATTGGATCAAGGACCAGCTGCATCCACAATGAACTCGGTTCTCTCATTGGATGATGGAAGATGGTCGCATCCCGCTGTTGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACTCCTTCCAGTTGCTCAAACAACCTTTGCCACCTCCTGTTCTTGCTCAGGTGTATCCTGAGTCTTCCCCCATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCTGGACCAGCTAAATCTTCTCAGGATTCTGGACCTGGTCCGAGTACATACCAACACCTACATATTCCTGTGAAAATGATGGAAGATTTTTTGAGACTGGCTTCCAAAAACACACAGAAAAACTTAGAGACATGTGGTGTTCTTGCAGGGTCCCTGAAAAACAGGGTTTTCCATATCACTACACTTATTATCCCAAAGCAGGAGTCAACTTCAGACTCGTGTTCAACATTGAATGAAGAAGAAATATTTGAAGTTCAGGACAGCTTATCACTGTTTCCTTTAGGCTGGATACATACACACCCATCACAAACTTGTTTCATGTCATCCGTGGACCTGCACACCCATTACTCATACCAGATAATGTTACCGGAGGCAATTGCAATTGTCATGGCCCCTACAGATACAACAAGTCCACATGGCATATTTCATCTATCCGATCCAGGGGGTGTGTCTGTAATTCGTAACTGCCAACAACGAGGATTTCATCCCCATGAGGAGCCCTCGGATGGAAGTCCAATCTACGAGCACTGTTCTCATGTCTATATGAATGCTAATTTGAAGTTTGATGTTGTTGACCTGAGAGAGAGATGA 1536 0.4147 MRIDLDSIARRVEVDNRIPLRYYYRIADNLLKQASIYRQENNIVDLYIILLRFSSLVSETIPYHRDYQASLHNERAAYKKRLLAVIDELEALRPEFKLLVNKLNNSHLEAPLPGENSFNMALPSSANSSLEWPPVNKSSNSPMDFRQSAGLGSHSSWKYNNNVSFSNSIPIDKQFQKLSLSVPPPKKETLSRHSFLGPSGLRGQWLGPSAEIKVQYPSSTDLTHVKDSSLNQAGQYDIVAIKELDQGPAASTMNSVLSLDDGRWSHPAVESCSPVVTESREDSFQLLKQPLPPPVLAQVYPESSPIPPSKVADPRPGPAKSSQDSGPGPSTYQHLHIPVKMMEDFLRLASKNTQKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCSTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANLKFDVVDLRER 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02873 511 Gene3D Cytidine Deaminase, domain 2 319 511 - -
Aip01g02873 511 Pfam USP8 dimerisation domain 4 93 IPR015063 -
Aip01g02873 511 SMART pad1_6 334 462 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aip01g02873 511 MobiDBLite consensus disorder prediction 296 314 - -
Aip01g02873 511 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 331 438 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aip01g02873 511 Gene3D - 3 112 - -
Aip01g02873 511 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 509 - -
Aip01g02873 511 ProSiteProfiles MPN domain profile. 335 465 IPR037518 -
Aip01g02873 511 MobiDBLite consensus disorder prediction 296 333 - -
Aip01g02873 511 CDD MPN_AMSH_like 332 509 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Aip01g02873 511 PANTHER AMSH-LIKE PROTEASE 3 509 - -
Aip01g02873 511 SUPERFAMILY JAB1/MPN domain 334 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02873 Aip-Chr1 130670479 130675940 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02873 K11866 - gmx:100812784 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02873 01 130670479 130675940 Aip01g02873 01 130670479 130675940 ECH