Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02333 ATGAGCGTGGAAGATCTTCCTCGGAAGGAGGTGAACGTGCTGAAGGGGCACGAGGGCGCCGTACTTTCCGCAAGGTTCAACGCTGATGGCAACTACTGCCTCAGCTGTGGCAAAGACCGCACCATACGCCTCTGGAATCCCCACCGCGGCATCCACATCAAGACCTACAAATCCCACGGCCGTGAAGTCCGCGATGTCCATGTCACTTCGGACAACTCCAAGCTATGTTCGTGTGGTGGAGATCGCCAGATTTTTTATTGGGATGTAGCTACAGGCCGTGTAATTCGAAAGTTCCGTGGTCATGACGGTGAGGTCAATGCTGTGAAATTCAATGAGTATTCCTCTGTGGTAGTATCAGCTGGATATGATCAATCCTTGCGTTCTTGGGACTGCAGATCCCACAGCACCGAGCCTATGCAGATTATTGACACATTTTCAGATAGTGTCATGTTTGTTTGCTTAACAAATACTGAAATCATTGGAGGAAGTGACGATGGAACTGTTCGAACCTTTGACATTCGCATTGGCAGGCATGTAGCGGCATATTTCAAAATGAAAGAGAAACACTCCCGAGAAACATCTGATAACTTGGGGCAACCGGTTAACTGCATATCCATGTCAAATGATGGTAACTGCATTCTAGCTGGTTGTCTCGACTCTACTCTGCGGCTTTTGGACCGATCTACAGGGGAGTCATTGCAAGAATATAAAGGGCACACTAATAAGTCATTTAAATTGGATTGCTGCCTTACCAATACGGATGCTCATGTAACTGCTGGCTCTGAGGATGGCTACATCTATTTTTGGGATCTTGTAGATGCATCGGTCGTGTCAAGATTCAGGGCTCATAACTCAGTGGTAACAAGCGTAAGTTATCACCCAAAGGAGAATTGCATGGTAACTGCTTCTGTGGATGGCACCATTCGAGTGTGGAAGACATAG 942 0.4724 MSVEDLPRKEVNVLKGHEGAVLSARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTSDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQSLRSWDCRSHSTEPMQIIDTFSDSVMFVCLTNTEIIGGSDDGTVRTFDIRIGRHVAAYFKMKEKHSRETSDNLGQPVNCISMSNDGNCILAGCLDSTLRLLDRSTGESLQEYKGHTNKSFKLDCCLTNTDAHVTAGSEDGYIYFWDLVDASVVSRFRAHNSVVTSVSYHPKENCMVTASVDGTIRVWKT 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02333 313 CDD WD40 10 312 - -
Aip01g02333 313 SMART WD40_4 91 130 IPR001680 GO:0005515
Aip01g02333 313 SMART WD40_4 49 88 IPR001680 GO:0005515
Aip01g02333 313 SMART WD40_4 135 172 IPR001680 GO:0005515
Aip01g02333 313 SMART WD40_4 184 226 IPR001680 GO:0005515
Aip01g02333 313 SMART WD40_4 229 270 IPR001680 GO:0005515
Aip01g02333 313 SMART WD40_4 273 312 IPR001680 GO:0005515
Aip01g02333 313 SMART WD40_4 7 46 IPR001680 GO:0005515
Aip01g02333 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 280 313 - -
Aip01g02333 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 313 IPR001680 GO:0005515
Aip01g02333 313 Gene3D - 5 313 IPR015943 GO:0005515
Aip01g02333 313 Pfam WD domain, G-beta repeat 9 46 IPR001680 GO:0005515
Aip01g02333 313 Pfam WD domain, G-beta repeat 53 88 IPR001680 GO:0005515
Aip01g02333 313 Pfam WD domain, G-beta repeat 198 224 IPR001680 GO:0005515
Aip01g02333 313 Pfam WD domain, G-beta repeat 231 270 IPR001680 GO:0005515
Aip01g02333 313 Pfam WD domain, G-beta repeat 278 312 IPR001680 GO:0005515
Aip01g02333 313 Pfam WD domain, G-beta repeat 93 130 IPR001680 GO:0005515
Aip01g02333 313 SUPERFAMILY WD40 repeat-like 6 312 IPR036322 GO:0005515
Aip01g02333 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 93 - -
Aip01g02333 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Aip01g02333 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Aip01g02333 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Aip01g02333 313 PANTHER WD40 REPEAT PROTEIN 6 312 - -
Aip01g02333 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 139 IPR001680 GO:0005515
Aip01g02333 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02333 Aip-Chr1 121737016 121739419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02333 95 311 Miscellaneous Gene Families AT5G08390 25.333 2.56e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02333 K13124 - gmx:100795039 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02333 01 121737016 121739419 Aip01g02333 01 121737016 121739419 ECH