LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g02236	ATGAGGTGGGAAAAGGTTCAGATGAACCCTTTAGAGGGCAATGATGGAGGAGGGCCAGGGAAGAGGTGGGGACACACCTGCAACGCCATTAGAGGTGGCAGACTTGTCTATGTCTTCGGTGGTTATGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTGTGAAACAGACTTGGAGCCAACCTGCAATAAAAGGCACCCCGCCTACTCCTAGAGACAGCCATACTTGCACTGCAATTGGTGATAATCTGTATGTGTTTGGGGGTACCGATGGCATGAACCCGTTGATGGATTTGCATATTCTAGACACTTCTTCAAATACGTGGATATCTCCAACTATAAGAGGCGAAGGGCCAGAGGCACGGGAGGGTCATAGTGCTGCAGTTGTTGGCAAACGGCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATAATAATACTGAAGTCTACTATAATGATCTTTATATATTGAATACTGAAACATTTGTATGGAAGTGTGCTCAAACATCAGGCACTCCACCATCTCCTCGCGATAGCCATACTTGCTCGTCTTGGAAAAACAAAATTATCGTGTTAGGGGGTGAAGATGGTCATGATTATTACTTGTCTGATGTCCACATCCTTGATACTGATACTCTAATTTGGAGGGAGCTGAGTACATCAGGCCAACTGTTGCCTCCACGAGCTGGTCATTCTACTGTCGCTTTTGGCAAGAACTTGTTTGTATTTGGCGGATTTACGGATGCACAAAACCTATACAATGACCTCTATATGCTTGACATCGATACTGGTATTTGGACAAATGTTGCAACGACTACCAATGGCCCTTCTGCTCGATTTTCTGTAGCCGGTGACTGTTTAGACCCATTTGTGGGCGGTGCTCTTGTGTTCATCGGTGGTTGTAATAAAAGCCTCGAGGCCCTGGACGACATGTATTTCCTCTACACAGGGATTGCTAGGGAAAGCGAACAGAGACCAGAGAAGTTATCTTTAAGAAAGCAGTTGAAACTAAAATGCCAAGAGCAAAATACCAATCCCGTTCAAAATCAAGTTCTGGTTAGATATGGAGTCGGTGCTGATGTTAGCCCGCTCATGACAGTGTTGAATTATAGCCAGCCAAGTAGACTAAATCTCCCAGTAAATCAAGGCTTCACTCCTGGAAAGAAAATGTTTGAATGCAAGGTTACTGAATCCATCTCGGAAGGTTATACTATCGAAACTATTATTGATGGAAAGCTTCTTCGAGGTGTTCTGTTTTCAAATAAGCCAAAGTCTTTGCACCCAGCTGCTAATACTTCAACCAGCAGGAAAAGGGCCGGTGGTGAAACTGACGTTATCTCAAATGGTATACACCCTGATAAATCAAAGATTCCTAAAGTGACCAATCAAGATGAAACAGAAAACAGACAAGCAGTTCACGGAGACAGTTTAGAATCTCATGAACACCGTGCTGAAGGGGTTGCTGCTCTTCTATCAAGCAACCTGACAGCTGCTGACACTTCTGATACCCATAAGGTTTCTGCTAACCCAGAACGAAATGATGATGGAAAGAATGAAGCACCCCAACCCGTAGGTGAAAACGTGAAAAATGATGGAGCAAATGACATAGTAAGTTCAAAAACTGATGGGCAAACAAGTGTACCAATTTCCAATTTTGAAGTTCCAAGACATGATAACAAAAGCGATGCACCAAACTGCAACTTTGAATTTCTAATTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTTTATTCTGTTTGGCTTGCCCCGAATCAATAGATTAA	1809	0.424	MRWEKVQMNPLEGNDGGGPGKRWGHTCNAIRGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSQPAIKGTPPTPRDSHTCTAIGDNLYVFGGTDGMNPLMDLHILDTSSNTWISPTIRGEGPEAREGHSAAVVGKRLFIFGGCGKSADNNTEVYYNDLYILNTETFVWKCAQTSGTPPSPRDSHTCSSWKNKIIVLGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVAFGKNLFVFGGFTDAQNLYNDLYMLDIDTGIWTNVATTTNGPSARFSVAGDCLDPFVGGALVFIGGCNKSLEALDDMYFLYTGIARESEQRPEKLSLRKQLKLKCQEQNTNPVQNQVLVRYGVGADVSPLMTVLNYSQPSRLNLPVNQGFTPGKKMFECKVTESISEGYTIETIIDGKLLRGVLFSNKPKSLHPAANTSTSRKRAGGETDVISNGIHPDKSKIPKVTNQDETENRQAVHGDSLESHEHRAEGVAALLSSNLTAADTSDTHKVSANPERNDDGKNEAPQPVGENVKNDGANDIVSSKTDGQTSVPISNFEVPRHDNKSDAPNCNFEFLISXXXXXXXXXXXXXCLFCLACPESID	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g02236	602	MobiDBLite	consensus disorder prediction	427	564	-	-
	Aip01g02236	602	SMART	kelc_smart	86	135	IPR006652	GO:0005515
	Aip01g02236	602	SMART	kelc_smart	35	85	IPR006652	GO:0005515
	Aip01g02236	602	SMART	kelc_smart	192	242	IPR006652	GO:0005515
	Aip01g02236	602	SMART	kelc_smart	243	289	IPR006652	GO:0005515
	Aip01g02236	602	MobiDBLite	consensus disorder prediction	536	556	-	-
	Aip01g02236	602	Pfam	Kelch motif	122	166	-	-
	Aip01g02236	602	MobiDBLite	consensus disorder prediction	429	445	-	-
	Aip01g02236	602	MobiDBLite	consensus disorder prediction	461	489	-	-
	Aip01g02236	602	Pfam	Galactose oxidase, central domain	34	83	-	-
	Aip01g02236	602	Gene3D	-	145	376	IPR015915	GO:0005515
	Aip01g02236	602	SUPERFAMILY	Galactose oxidase, central domain	16	240	IPR011043	-
	Aip01g02236	602	MobiDBLite	consensus disorder prediction	509	523	-	-
	Aip01g02236	602	Gene3D	-	1	144	IPR015915	GO:0005515
	Aip01g02236	602	MobiDBLite	consensus disorder prediction	1	22	-	-
	Aip01g02236	602	PANTHER	GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN	1	475	-	-
	Aip01g02236	602	Pfam	Galactose oxidase, central domain	231	278	-	-
	Aip01g02236	602	Pfam	Galactose oxidase, central domain	180	225	-	-
	Aip01g02236	602	PANTHER	KELCH REPEAT DOMAIN	1	475	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g02236	49	308	Acyl Lipid Metabolism Gene Families	AT3G05420	29.670	6.36e-29	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g02236	-		-	aip:107634676	1186.79

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip01g02236	01	118533177	118537932	Aip01g02236	01	118533177	118537932	ECH