LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g02232	ATGGCAATGCAGGAAGCAAGCCCTGCCACCGCTCCTAGTGCCCAAGTTGTTGGCAACGCATTTGTGGAGCAATACTATCACATTCTACACCAATCCCCAAATTTGGTACACAGATTTTACCAGGACTCAAGTTTCTTAAGCCGTTCAGACAACGATGGCCAGATGACAACTGTGACTACTATGCAAGCAATCAATGAAAAGATACTTTCCTTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCTGATGCTCAGGAGTCATATGAGAAAGGTGTGATAGTTTTAGTAACTGGATGCTTAACCGGGAAGGATAATGTGAAAAGGAAGTTCTCACAGACATTCTTTCTGGCACCACAAGATAAGGGGTATTATGTCTTAAATGACGTCTTTAGGTATGTTGAGGAGAATGACACACTGCAGTCATCAAATCCCGACTCCACTGTCAATGAAAAAGCTGAGGCAGTGGCCATGCCGGAAGCAGAACATCTTGTGACCAACCCTGCAATAACAGCAGAGAGTGAAAACGTTAATAATGGAGCTGAAGGTTATAATCCAGAGGACAATGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGCTGAACCCTCTGCAGATTTAAGTCAGAATGTTGCGATTCATGATTCAACTTCTGCAGTCCAGGATGATGCACCGAAGAAGTCATATTCATATGCATCAATTGTAATGAAAAGTAACACAGCATCTGGTCCTGTATATGTTCCCAGCCGAACTGTAAGAGCAGTACCTGCTAAATCCAGTGAACAATGGCCTACTACTACCAAACCAACTCCAGTACCAGAGGCATTAGCTCCTAGTAATGACAGTGCTCCTGGGAGTAGTGATGTTCATGAGGAAGCTGAAGGTCATTCCATATACATACGGAATTTGCCATTTAATGCAACTGTTGAACAACTTGAGGAGGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGAATCCAAGTTAGAAGTAGTAAGCATGGCTTCTGTTTCGGCTTTGTTGAATTTGAGGAAATGACTTCCATGAATAGCGCACTTGAGGCATCACCTATCACCGTTGGTGATCGACAAGCTGTTATTGAGGAGAAGAGAACTACTACAAGAGTTAGTGGTAGTGGAAGAGGAAGGTTTCCCTCCGGAAGAGGTGGGTTCAGAAGTGACAGTTTCAGGGGGCGTGCGAAATTTGGTGGCGGAAGAGGTTATGGCAGAAATGAGTTCAGAAACCAAGGAGAGTTCACAACGCGACCTAAGGGTCCAGCTGGACAAAAGGGAGATGGTTCTCAACGGCCCAGTCAAAATGGAAGTGGGCGGGGTGGACGGCAAGGTGTTGGGAACCGAAGTACTGCACCATCAACTTGA	1380	0.4428	MAMQEASPATAPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRSDNDGQMTTVTTMQAINEKILSLNYEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVKRKFSQTFFLAPQDKGYYVLNDVFRYVEENDTLQSSNPDSTVNEKAEAVAMPEAEHLVTNPAITAESENVNNGAEGYNPEDNEEEGSVIDEEVAEPSADLSQNVAIHDSTSAVQDDAPKKSYSYASIVMKSNTASGPVYVPSRTVRAVPAKSSEQWPTTTKPTPVPEALAPSNDSAPGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEEMTSMNSALEASPITVGDRQAVIEEKRTTTRVSGSGRGRFPSGRGGFRSDSFRGRAKFGGGRGYGRNEFRNQGEFTTRPKGPAGQKGDGSQRPSQNGSGRGGRQGVGNRSTAPST	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g02232	459	SUPERFAMILY	NTF2-like	13	134	IPR032710	-
	Aip01g02232	459	SMART	rrm1_1	297	368	IPR000504	GO:0003723
	Aip01g02232	459	MobiDBLite	consensus disorder prediction	169	183	-	-
	Aip01g02232	459	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	296	372	IPR000504	GO:0003723
	Aip01g02232	459	MobiDBLite	consensus disorder prediction	254	293	-	-
	Aip01g02232	459	SUPERFAMILY	RNA-binding domain, RBD	292	399	IPR035979	GO:0003676
	Aip01g02232	459	MobiDBLite	consensus disorder prediction	432	459	-	-
	Aip01g02232	459	ProSiteProfiles	Nuclear transport factor 2 domain profile.	17	133	IPR018222	-
	Aip01g02232	459	PANTHER	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	1	451	IPR039539	-
	Aip01g02232	459	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	298	355	IPR000504	GO:0003723
	Aip01g02232	459	Pfam	Nuclear transport factor 2 (NTF2) domain	17	133	IPR002075	-
	Aip01g02232	459	Gene3D	-	7	137	-	-
	Aip01g02232	459	CDD	RRM_SF	298	355	-	-
	Aip01g02232	459	MobiDBLite	consensus disorder prediction	255	273	-	-
	Aip01g02232	459	CDD	NTF2	13	135	IPR018222	-
	Aip01g02232	459	PANTHER	RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN	1	451	-	-
	Aip01g02232	459	MobiDBLite	consensus disorder prediction	370	459	-	-
	Aip01g02232	459	MobiDBLite	consensus disorder prediction	169	195	-	-
	Aip01g02232	459	Gene3D	-	288	377	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g02232	Aip-Chr1	118125420	118129847	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g02232	K24983		-	gmx:100801253	634.409

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip01g02232	01	118125420	118129847	Aip01g02232	01	118125420	118129847	ECH